Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,376,705 – 5,376,798 |
Length | 93 |
Max. P | 0.973902 |
Location | 5,376,705 – 5,376,798 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 68.70 |
Mean single sequence MFE | -18.93 |
Consensus MFE | -3.76 |
Energy contribution | -4.56 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.55 |
Structure conservation index | 0.20 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5376705 93 - 27905053 AAAACCAGCUAGCCAACAAGAGUUUCGUUGGUAUACAUAUCCAUAUAUUCAUAUAAUCAAUGUGUGUAAAGAAAACGAAACUA----AGAAAAGCGA ...........((.......(((((((((..(((((((((...((((....))))....))))))))).....))))))))).----......)).. ( -19.74) >DroVir_CAF1 16416 79 - 1 AAAGGCAGGCA-------AACAUUUUUAUGGUAUACAUA----UAUAUUCAUAUAAUCGAUGUGCGUAUG-----CGUAUGUGUGUGUGUGCUUC-- ..(((((.(((-------..(((....))).((((((((----(((((.(((((.....))))).)))).-----.)))))))))))).))))).-- ( -20.50) >DroEre_CAF1 11943 93 - 1 AAAACCAGCUAGCCAACAAGCGUUUCGUUGGUAUACAUAUCCAUAUAUUCAUAUAACCAAUGUGUGUAAAGAAAACGAAACUA----AGAAAAACGA .......(((........)))((((((((..(((((((((...((((....))))....))))))))).....))))))))..----.......... ( -18.60) >DroYak_CAF1 14476 93 - 1 AAAACCAGCUAGCCAACAAGCGUUUCGGUGGUAUACAUAUCCAUAUAUUCAUAUAAUCAAUGUGUGUAAAGAAAACGAAACUA----AGAAAAACGA .......(((........)))((((((.(..(((((((((...((((....))))....)))))))))..)....))))))..----.......... ( -16.10) >DroMoj_CAF1 12654 78 - 1 AAAGUCAGGCA-------UACAUUUCUAUAGUAUACAUA--CAUAUAUUCAUAUAAUCGAUGUGCGUAUG-----CGUGUGU---CGUAUGUCUC-- ......(((((-------((((((.....)))..(((((--(.(((((.(((((.....))))).)))))-----.))))))---.)))))))).-- ( -19.70) >consensus AAAACCAGCUAGCCAACAAGCGUUUCGAUGGUAUACAUAUCCAUAUAUUCAUAUAAUCAAUGUGUGUAAAGAAAACGAAACUA____AGAAAAACGA ...............................(((((((((...((((....))))....)))))))))............................. ( -3.76 = -4.56 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:39 2006