Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,367,821 – 5,367,926 |
Length | 105 |
Max. P | 0.975025 |
Location | 5,367,821 – 5,367,926 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -11.50 |
Consensus MFE | -11.10 |
Energy contribution | -11.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.97 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.975025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5367821 105 - 27905053 ------UUCAAAUUCAAUCAACGCAACAACUUUCAAUUCAACCAAUCC---AACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUUA ------..........(((...((((......................---.((((((..(((((....))))).))))))((((....))))))))...)))........... ( -11.30) >DroVir_CAF1 7591 105 - 1 ------UUCAAAUUCAACAACCGCAACAACUUUCAAUUCAACCAAUAC---AACAACAAAUAGUAACCCUACUGAUGUUGUGAAUGUCAAUUCUUGUACCGAUAUAAUUCCUCA ------...............((..((((...................---.((((((..(((((....))))).))))))((((....))))))))..))............. ( -11.00) >DroPse_CAF1 2813 114 - 1 UUCGAAUUCAAAUUCAACAAACGCAACAACUUUCAAUUCAACCAAUCCACAAACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUUA ...((((....))))......((..((((.......................((((((..(((((....))))).))))))((((....))))))))..))............. ( -12.30) >DroYak_CAF1 5686 105 - 1 ------UUCAAAUUCAAUCAACGCAACAACUUUCAAUUCAACCAAUCC---AACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUCA ------..........(((...((((......................---.((((((..(((((....))))).))))))((((....))))))))...)))........... ( -11.30) >DroMoj_CAF1 3921 105 - 1 ------UUCAAAUUCAACAACCGCAACAACUUUCAAUUCAACCAAUAC---AACAACAAAUAGUAUUCCUACUGAUGUUGUGAAUGUCAAUUCUUGUACCGAUAUAAUUCCUCA ------...............((..((((...................---.((((((..(((((....))))).))))))((((....))))))))..))............. ( -10.80) >DroPer_CAF1 2898 114 - 1 UUCGAAUUCAAAUUCAACAAACGCAACAACUUUCAAUUCAACCAAUCCACAAACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUUA ...((((....))))......((..((((.......................((((((..(((((....))))).))))))((((....))))))))..))............. ( -12.30) >consensus ______UUCAAAUUCAACAAACGCAACAACUUUCAAUUCAACCAAUCC___AACAACAAAUAGUAAUCCUACUGAUGUUGUGAAUGUAAAUUCUUGUACCGAUAUAAUUCCUCA .....................((..((((.......................((((((..(((((....))))).))))))((((....))))))))..))............. (-11.10 = -11.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:38 2006