Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,364,944 – 5,365,038 |
Length | 94 |
Max. P | 0.628690 |
Location | 5,364,944 – 5,365,038 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 80.33 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -21.28 |
Energy contribution | -21.53 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.36 |
Structure conservation index | 0.69 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5364944 94 + 27905053 UGCUGCUGGUCGACGCCGUCGAAGUAGUCGGAGGCAUUGCCGCGGCAAAUUGGGCAGGUGCGAUUCGACUGG------UAGGUAAUGUAGGUAAUUGAAU ..((((..((((((((((((.((...((((..(((...))).))))...)).))).))))....)))))..)------)))................... ( -33.30) >DroSec_CAF1 128 86 + 1 UGCUGCUGGUCGGCGCCGUCGAAGUAGUCGGAGGCAUUGCCGCGGCAAAUUGGGCACGUGCGAUUCGACUGG------UAGGUA--------AAUUGAGU ..((((..(((((.(((..(((.....)))..)))(((((.(((((.......)).)))))))))))))..)------)))...--------........ ( -32.90) >DroSim_CAF1 128 92 + 1 UGCUGCUGGUCGGCGCCGUCGAAGUAGUCGGAGGCAUUGCCGCGGCAAAUUGGGCAGGUGCGAUUCGACUGUAAAUUCGAGGUA--------AAUUGAGU .((((.....))))(((.(((((.((((((((.((((((((.(((....))))))).))))..))))))))....)))))))).--------........ ( -32.30) >DroEre_CAF1 174 86 + 1 UGCUGCUGGUCGGCGCCGUCGAAGUAGUCGGAGGCAUUUCCACGGCAAAUUGGGCAAGUGCGAUUGGACUGG------UAAGCA--------AAUAGGGC ((((((..(((...(((((.(((((.((.....))))))).))))).(((((.(....).))))).)))..)------).))))--------........ ( -30.00) >DroWil_CAF1 209 93 + 1 UGCUGCUGAUCGACACCAUCAAAGUAAUCCGAAGCAUUGCCACGGCAUAUGGGGCAUGUGCGAUUGGACUGC------AGACCA-AAAGGAAAAUAAAUU ..((((((((.......))))......(((((.((((((((.((.....)).)))).))))..)))))..))------)).((.-...)).......... ( -22.20) >DroYak_CAF1 2726 86 + 1 UGCUGCUGGUCGGCGCCGUCGAAGUAGUCGGAGGCAUUGCCACGGCAGAUUGGGCAGGUGCGAUUCGACUGG------UGGGCA--------AAUGGAUU (((..(..((((((((((((.((...((((..(((...))).))))...)).))).)))))....))))..)------..).))--------........ ( -34.10) >consensus UGCUGCUGGUCGGCGCCGUCGAAGUAGUCGGAGGCAUUGCCACGGCAAAUUGGGCAGGUGCGAUUCGACUGG______UAGGCA________AAUUGAGU ...((((..(((((...)))))..((((((((.((((((((.(((....))))))).))))..)))))))).........))))................ (-21.28 = -21.53 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:33 2006