Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 846,193 – 846,306 |
Length | 113 |
Max. P | 0.599520 |
Location | 846,193 – 846,306 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -16.70 |
Consensus MFE | -16.62 |
Energy contribution | -16.40 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | 0.32 |
Structure conservation index | 1.00 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 846193 113 + 27905053 CACACACACCCACA-------CCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAAAGACGGAAAGAAAAAUGAAAUGAAAUGAAAUCAAUGGCAGGGCAAUUCCCGAACAGCAGC ..............-------........(((.(((((..((((.....((((..........(.....)..........(((.......))).)))).)))).....))))).)))... ( -16.60) >DroSim_CAF1 21127 120 + 1 CACCCAAACCCACACCCACCACCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAAAGACGGAAAGAAAAAUGAAAUGGAAUGAAAUCAAUGGCAGGGCAAUUCCCAAACAGCAGC .............................(((.(((((..((((.....((((..........(.....)...............((....)).)))).)))).....))))).)))... ( -16.60) >DroEre_CAF1 22973 103 + 1 CA------------CCCACCACCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAACGACGGAAAGAAAAAUGAAA-----UGAAAUCAAUGGCAGGGCAAUUCCCAAACAGCAGC ..------------...............(((.(((((..((((.....((((..........(.....).....(((..-----.....))).)))).)))).....))))).)))... ( -16.90) >consensus CAC_CA_ACCCACACCCACCACCCACACAGCUCUUUGGUAGCUCGUUAGGCCAAUAAAAAAGACGGAAAGAAAAAUGAAAUG_AAUGAAAUCAAUGGCAGGGCAAUUCCCAAACAGCAGC .............................(((.(((((..((((.....((((..........(.....)...............((....)).)))).)))).....))))).)))... (-16.62 = -16.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:37 2006