Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,363,758 – 5,363,913 |
Length | 155 |
Max. P | 0.997495 |
Location | 5,363,758 – 5,363,876 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.75 |
Mean single sequence MFE | -14.42 |
Consensus MFE | -13.85 |
Energy contribution | -13.85 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.96 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5363758 118 - 27905053 UUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUAGCAAAAGAAAAAAAAACCAACAAGAAAACCAAACAGAAACAAUGAUAAUGAUAUCCUAUGAGGGGAAAAAAAAG ..............(((.(((((((((.....))))))((....))...............................))).......((((....))))......))).......... ( -14.70) >DroSec_CAF1 23212 107 - 1 UUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUAGCAAAAGAAAAAAAA----A---CAAAACCAAACAAAAACAAUGAUAAAGAUAUCCUAUGAGGGAAAAAA---- ((((..(((((..............)))))(((((.((((....)))))))))......----)---)))...........................((((....)))).....---- ( -14.44) >DroSim_CAF1 22642 114 - 1 UUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUAGCAAAAGAAAAAAAAAACAA---CAAAACCAAACAAAAACAAUGAUAAUGAUAUCCUAUGAGGGGAAAAA-AAG ((((..(((((..............)))))(((((.((((....)))))))))..........)---)))...........................((((.....))))....-... ( -14.54) >DroEre_CAF1 23408 109 - 1 UUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUAGCAAAAAACAAAACA----A----AAAAACAAACAAAAACAAUGAUAAUGAUAUCCUAUGAGGGGAAAAA-AAG ..............(((.((((((((....))))))((((....))))...........----.----....................................))))).....-... ( -14.00) >consensus UUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUAGCAAAAGAAAAAAAA____A___CAAAACCAAACAAAAACAAUGAUAAUGAUAUCCUAUGAGGGGAAAAA_AAG ..............(((...((((((....))))))((((....)))).........................................................))).......... (-13.85 = -13.85 + -0.00)
Location | 5,363,797 – 5,363,913 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -16.36 |
Consensus MFE | -15.06 |
Energy contribution | -15.46 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.25 |
Structure conservation index | 0.92 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5363797 116 - 27905053 -AAACAGC--AUAAAUAUAGUGCAUUGCAUUUUAUACUAAUUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUA-GCAAAAGAAAAAAAAACCAACAAGAAAACCAAACA -.......--.......(((((((...((.((..(((.....)))..)).))........((((((....)))))).)))))))-................................... ( -17.80) >DroSec_CAF1 23247 109 - 1 -AACCAGC--AUAAAUAUAGUGCAUUGCAUUUUAUACUAAUUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUA-GCAAAAGAAAAAAAA----A---CAAAACCAAACA -.......--.......(((((((...((.((..(((.....)))..)).))........((((((....)))))).)))))))-...............----.---............ ( -17.80) >DroSim_CAF1 22680 113 - 1 -AACCAGC--AUAAAUAUAGUGCAUUGCAUUUUAUACUAAUUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUA-GCAAAAGAAAAAAAAAACAA---CAAAACCAAACA -.......--.......(((((((...((.((..(((.....)))..)).))........((((((....)))))).)))))))-....................---............ ( -17.80) >DroEre_CAF1 23446 108 - 1 -AACCAGC--AUAAAUAUAGUGCAUUGCAUUUUAUACUAAUUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUA-GCAAAAAACAAAACA----A----AAAAACAAACA -.......--.......(((((((...((.((..(((.....)))..)).))........((((((....)))))).)))))))-...............----.----........... ( -17.80) >DroAna_CAF1 23184 112 - 1 GAACAAACAAAUAAUUAUACUGCAUUGCAUUUUAUACUAAUUAUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUAAGCAAAAACCAAAA----CAA---CAAGG-AUAAAA ..........(((((((...(((...)))........)))))))...........((...((((((....))))))((((.....)))).........----...---...))-...... ( -10.60) >consensus _AACCAGC__AUAAAUAUAGUGCAUUGCAUUUUAUACUAAUUGUACGAACUGAACCCACUGAAGAAGUUCUUCUUCUUGCACUA_GCAAAAGAAAAAAAA__CAA___CAAAACCAAACA .................(((((((...((.((..(((.....)))..)).))........((((((....)))))).))))))).................................... (-15.06 = -15.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:32 2006