Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,362,813 – 5,362,932 |
Length | 119 |
Max. P | 0.523916 |
Location | 5,362,813 – 5,362,932 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.33 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -22.14 |
Energy contribution | -22.34 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.93 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5362813 119 + 27905053 AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG ......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10) >DroSec_CAF1 22272 119 + 1 AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG ......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10) >DroSim_CAF1 21696 119 + 1 AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG ......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10) >DroEre_CAF1 22479 119 + 1 AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA-GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG ......................((((.((((((-((((....))))))(((((((..((((((.....))))))..))))))).......)))).)))).(((....))).......... ( -24.10) >DroAna_CAF1 22105 119 + 1 AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUAUGUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUU-UUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG ......................((((.(((((.(((((.((((...))))(((((..((((((.....))))))..))-))).))))).))))).)))).(((....))).......... ( -22.10) >consensus AUCCAUUCUCACAAAAAAUCAAUGCUAUCCAUA_GUAUAUAUAUGCUAUAAAAAGUUGUUGAGUUAGUUUCAAUGGUUUUUUAAUACGAAUGGAGGGCAGGAAUCAUUUCAAUUUACUUG ......................((((.(((((..((((....))))..(((((((..((((((.....))))))..)))))))......))))).)))).(((....))).......... (-22.14 = -22.34 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:30 2006