Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,360,355 – 5,360,449 |
Length | 94 |
Max. P | 0.581659 |
Location | 5,360,355 – 5,360,449 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -18.25 |
Energy contribution | -19.33 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.14 |
Mean z-score | -1.39 |
Structure conservation index | 0.82 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5360355 94 + 27905053 AGAAAUAACUGCACAAAUCCUCUGUCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUCCUUGCCAUGGCUGUUGU---UGUUGUUGUUCUUUC .((((.(((.((((((.....(.((((..((.((((((((.((......)).)).))))))....))..)))).)...)---)).))).))).)))) ( -19.80) >DroSec_CAF1 19794 97 + 1 AGAAAUAACUGCAAAAAUCCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUACUUGCCAUGGCUGUUGUUCUUGUUGUUGUUGUCUC (((((((((.((((.(((...(.((((..((.((((((((.((......)).)).))))))....))..)))).)..))).)))).)))))).))). ( -24.30) >DroSim_CAF1 19219 94 + 1 AGAAAUAACUGCAAAAAUCCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUACUUGCCAUGGCUGUUGU---UGUUGUUGUUGUCUC .((.(((((.((((.(((...(.((((..((.((((((((.((......)).)).))))))....))..)))).)..))---).)))).))))).)) ( -23.10) >DroEre_CAF1 19946 94 + 1 AGAAAUAGCUGCAAAAAUGCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUCCUACUUGCCGUUGCUGCUAU---UGUUGUUGCUGUUUC .((((((((.((((.(((((...((.((((.(((..(((((((.........)))))))....))).)))))).)).))---).)))).)))))))) ( -28.00) >DroYak_CAF1 20965 94 + 1 AGAAAUAACUACAAAAAUGCUCUGCCAAUGCCAGCAGAAGUGAUCUUCUUCUUCAUCUCAUACUUGCCGUUGUUGCUGC---UGUUGUUGCUGUUUC .((((((.(.((((....((...(((((((.(((..((..(((.........)))..))....))).)))))..)).))---..)))).).)))))) ( -16.40) >consensus AGAAAUAACUGCAAAAAUCCUCUGCCAAUGCCAGCAGAGGUGAUCUUCUUCUUCAUCUGCUACUUGCCAUGGCUGUUGU___UGUUGUUGUUGUUUC .((((((((.((((.........((((..((.((.((((((((.........)))))).)).)).))..))))...........)))).)))))))) (-18.25 = -19.33 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:29 2006