Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,352,548 – 5,352,654 |
Length | 106 |
Max. P | 0.959874 |
Location | 5,352,548 – 5,352,654 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 88.77 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -21.42 |
Energy contribution | -22.66 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.11 |
Mean z-score | -2.00 |
Structure conservation index | 0.83 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.959874 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5352548 106 - 27905053 CGUUUGGAUCUAAACUGUUGGAAUGCGAAUUGAUAGAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCGAUCUGUGGAAAUCUUAAAGUUUGUCAAUUUCAUUCCG .(((((....)))))....((((((.(((((((((((.......((((((.((.....((((.....)))).)).)))))).......))))))))))))))))). ( -29.04) >DroSec_CAF1 11987 106 - 1 CGUUUGGAUCUAAACAGUUGGAAUGCGAACUGAUACAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCAAUCUGUGGAAAUCUUGAAGUUUGUCAAUUUCAUUCCG .(((((....)))))....((((((.(((.(((((.((((((.(((((((.((...(((........)))..)).))))).)).))))))))))).))))))))). ( -26.90) >DroSim_CAF1 11383 106 - 1 CGUUUGGAUCUAAACAGCUGGAAUGCGAACUGAUACAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCAAUCAGUGGAAAUCUUGAAGUUUGUCAAUUUCAUUCCG .(((((....)))))....((((((.(((.(((((.((((((.(((((((.(....(((........)))...).))))).)).))))))))))).))))))))). ( -25.10) >DroEre_CAF1 12022 106 - 1 CGUUUGGUAAUCAAUUGCUGGAUUGCGAAUUGAUACAAUUUUCAUUUCCCUCAAUCUUGUCAUUCUGCAAUCUGUGGAAAUGUUGAAGUUUGUCAAUUUAAUUCCG ......((((((........))))))(((((((((.(((((((((((((..((...((((......))))..)).)))))))..)))))))))))))))....... ( -23.90) >DroYak_CAF1 13029 106 - 1 CGUUUGGAUAUCAAUUGCUGGAAUGCCAAUUGAUAUAAUUUCGAUUUUCCUCAAUUUUGUCAUGCUUCAAUCUGUGGAAAUGUUAAAGUUUGUCAAUUUCAUUCCG ...................((((((..((((((((.(((((..(((((((.((...(((........)))..)).))))).))..))))))))))))).)))))). ( -23.70) >consensus CGUUUGGAUCUAAACUGCUGGAAUGCGAAUUGAUACAAUUUCCAGUUUCCUCAAUCUUGUCGUGCUUCAAUCUGUGGAAAUCUUGAAGUUUGUCAAUUUCAUUCCG .(((((....)))))....((((((.(((((((((.((((((.(((((((.((...(((........)))..)).))))).)).))))))))))))))))))))). (-21.42 = -22.66 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:25 2006