Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,349,266 – 5,349,358 |
Length | 92 |
Max. P | 0.993894 |
Location | 5,349,266 – 5,349,358 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 98.48 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -30.08 |
Energy contribution | -30.48 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.95 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5349266 92 + 27905053 AACAGCAACCGGCAGAGGCCUUAACUCCAACCGCAAGUGCCACUGCAAUUGCAGCGGCGAGUGCGCCUGGGAAGAAGCAAUUGAACGCAACG ....((....(((....))).....((((..((((..((((.((((....)))).))))..))))..))))...............)).... ( -32.20) >DroSec_CAF1 8713 92 + 1 AACAGCAACCGGCAGAGGCCUUAACUCCAACCGCAAGUGCCACUGCAAUCGCAGCGGCGAGUGCGCCUGGGAAGAAGCAAUUGAACGCAACG ....((....(((....))).....((((..((((..((((.((((....)))).))))..))))..))))...............)).... ( -31.90) >DroSim_CAF1 8106 92 + 1 AACAGCAACCGGCAGAGGCCUUAACUCCAACCGCAAGUGCCACUGCAAUCGCAGCGGCGAGUGCGCCUGGGAAGAAGCAAUUGAACGCAACG ....((....(((....))).....((((..((((..((((.((((....)))).))))..))))..))))...............)).... ( -31.90) >DroEre_CAF1 8703 92 + 1 AACAGCAACCGGCAGAGGCCUUAACUCCAACCGCAAGUGCCACUGCAAUUGCAGCGGCGAGUGCGCCGGGGAAGAAGCAAUUGAACGCAACG ........(((((.(((.......))).....(((..((((.((((....)))).))))..)))))))).......((........)).... ( -34.30) >DroYak_CAF1 9751 92 + 1 AACAGCAACCGGCAGAGGCCUUAACUCCAACCGCAAGUGCCACUGCAAUUGCUGCGGCGAGUGCGCCUGGGAAGAAGCAAUUGAACGCAACG ....((....(((....))).....((((..((((..((((.(.((....)).).))))..))))..))))...............)).... ( -27.60) >consensus AACAGCAACCGGCAGAGGCCUUAACUCCAACCGCAAGUGCCACUGCAAUUGCAGCGGCGAGUGCGCCUGGGAAGAAGCAAUUGAACGCAACG ....((....(((....))).....((((..((((..((((.((((....)))).))))..))))..))))...............)).... (-30.08 = -30.48 + 0.40)
Location | 5,349,266 – 5,349,358 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 98.48 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -33.14 |
Energy contribution | -33.54 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.97 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.934925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5349266 92 - 27905053 CGUUGCGUUCAAUUGCUUCUUCCCAGGCGCACUCGCCGCUGCAAUUGCAGUGGCACUUGCGGUUGGAGUUAAGGCCUCUGCCGGUUGCUGUU ....(((......)))......((((.((((...((((((((....))))))))...)))).))))(((...(((....)))....)))... ( -35.20) >DroSec_CAF1 8713 92 - 1 CGUUGCGUUCAAUUGCUUCUUCCCAGGCGCACUCGCCGCUGCGAUUGCAGUGGCACUUGCGGUUGGAGUUAAGGCCUCUGCCGGUUGCUGUU ....(((......)))......((((.((((...((((((((....))))))))...)))).))))(((...(((....)))....)))... ( -34.50) >DroSim_CAF1 8106 92 - 1 CGUUGCGUUCAAUUGCUUCUUCCCAGGCGCACUCGCCGCUGCGAUUGCAGUGGCACUUGCGGUUGGAGUUAAGGCCUCUGCCGGUUGCUGUU ....(((......)))......((((.((((...((((((((....))))))))...)))).))))(((...(((....)))....)))... ( -34.50) >DroEre_CAF1 8703 92 - 1 CGUUGCGUUCAAUUGCUUCUUCCCCGGCGCACUCGCCGCUGCAAUUGCAGUGGCACUUGCGGUUGGAGUUAAGGCCUCUGCCGGUUGCUGUU ....(((......))).......((((((((...((((((((....))))))))...)))((((........))))...)))))........ ( -34.30) >DroYak_CAF1 9751 92 - 1 CGUUGCGUUCAAUUGCUUCUUCCCAGGCGCACUCGCCGCAGCAAUUGCAGUGGCACUUGCGGUUGGAGUUAAGGCCUCUGCCGGUUGCUGUU ....(((......))).........((((....))))(((((((((((((.(((.(((((.......).))))))).))).)))))))))). ( -33.20) >consensus CGUUGCGUUCAAUUGCUUCUUCCCAGGCGCACUCGCCGCUGCAAUUGCAGUGGCACUUGCGGUUGGAGUUAAGGCCUCUGCCGGUUGCUGUU ....(((......)))......((((.((((...((((((((....))))))))...)))).))))(((...(((....)))....)))... (-33.14 = -33.54 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:24 2006