Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,347,198 – 5,347,312 |
Length | 114 |
Max. P | 0.553755 |
Location | 5,347,198 – 5,347,312 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.56 |
Mean single sequence MFE | -38.27 |
Consensus MFE | -25.77 |
Energy contribution | -26.17 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.36 |
Mean z-score | -2.00 |
Structure conservation index | 0.67 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5347198 114 + 27905053 GCAAGGAGUUAUCCGAGUUUCUGCGCGAGAAGUCUAACAUUGAGGAGCAGAACUCAAAGAUGAUGUCCAAGCUGGCCCACAAGGC------UGGUACACUAAAUAGCACAUUCGCUCCUG ((..(((((((((.(((((.((((.(((...........)))....)))))))))...)))))).)))..((..(((.....)))------..))..........))............. ( -30.50) >DroVir_CAF1 17993 120 + 1 GCAAGGAGCUGUCCGAGUUUUUGCGCGAAAAGUCCAACAUCGAGGAGCAAAACUCGAAAAUGAUGUCCAAGCUGGCCCACAAGGCCAGCACGGGCACAUUGAACAGCACCUUUGCGCCGG ((((((.(((((.((((((((.((.(((...........)))....))))))))))..((((.(((((..(((((((.....)))))))..)))))))))..))))).)).))))..... ( -50.50) >DroGri_CAF1 7142 120 + 1 GCAAGGAGCUCUCCGAGUUUCUGCGCGAGAAGUCGAACAUUGAGGAGCAAAACUCGAAAAUGAUGUCGAAGCUGGCGCACAAGGCCAGUACGGGCACAUUGAACAGCACAUUUGCGCCCG ((.((((((((...))))))))((((.((...((((.((((...(((.....)))...))))...))))..)).)))).....)).....(((((.((.((.......))..)).))))) ( -39.20) >DroWil_CAF1 7761 120 + 1 GCAAAGAGUUAUCCGAGUUCUUACGUGAAAAGUCCAACAUUGAGGAGCAGAAUUCAAAAAUGAUGUCAAAAUUGGCCCAUAAGGCCAGUACGGGUACACUGAAUAGUACUUUUGCACCCG ((((((......(((.((((((..(((..........)))..)))))).((..(((....)))..))...(((((((.....))))))).)))((((........))))))))))..... ( -28.70) >DroMoj_CAF1 7071 120 + 1 GCAAGGAGCUGUCAGAGUUUCUGCGCGAGAAAUCGAACAUAGAGGAGCAGAACUCGAAAAUGAUGUCCAAGUUGGCCCACAAGGCCAGCACGGGCACAUUGAACAGCACCUUUGCACCAG ((((((.((((((.(((((.((((.(((....)))...........)))))))))...((((.(((((..(((((((.....)))))))..)))))))))).))))).)).))))..... ( -50.70) >DroAna_CAF1 6482 114 + 1 GCAAGGAGUUGUCCGAGUUUCUGCGCGAAAAGUCAAACAUCGAGGAGCAGAACUCAAAGAUGAUGUCCAAACUGGCCCACAAGGC------UGGCACACUGAACAGCACAUUCGCUCCGG ....(((((.....(((((.((((.(((...........)))....)))))))))...((((.(((.((..(..(((.....)))------..).....)).)))...)))).))))).. ( -30.00) >consensus GCAAGGAGCUGUCCGAGUUUCUGCGCGAAAAGUCCAACAUUGAGGAGCAGAACUCAAAAAUGAUGUCCAAGCUGGCCCACAAGGCCAG_ACGGGCACACUGAACAGCACAUUUGCACCCG ((((((.(((((..(((((.((((.(((...........)))....))))))))).....((.((((...(((((((.....)))))))...))))))....))))).).)))))..... (-25.77 = -26.17 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:22 2006