Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,343,127 – 5,343,229 |
Length | 102 |
Max. P | 0.997152 |
Location | 5,343,127 – 5,343,229 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 70.94 |
Mean single sequence MFE | -25.59 |
Consensus MFE | -12.44 |
Energy contribution | -12.95 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.16 |
Mean z-score | -2.84 |
Structure conservation index | 0.49 |
SVM decision value | 2.81 |
SVM RNA-class probability | 0.997152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5343127 102 + 27905053 CAAUGCCUGCAGCUAUAGCUGCUGUCA-----------------UUGACUUUACUUUCAUUUUAGCAGUGUAAGUUUUAAAUUUUGUUUCCUCCCAUCCAAGAUAUGAAACUGUAACUA (((((.(.(((((....))))).).))-----------------)))...................(((...(((((((.((((((..(......)..)))))).)))))))...))). ( -24.80) >DroSec_CAF1 2506 118 + 1 CAAUGUCUGCAGCCAUAUCUGCUGUCAAUAUAAAAUGUGUUAGUUUGACU-UACUUAGACUUUAGCAGUGUAAGUUUUACAUUUUGGUUGCUCCCAUCCAAGAUAUGAAACUGUAACUA ..((((..(((((.......)))))..)))).....((...(((((((..-...)))))))...))(((...(((((((.(((((((.((....)).))))))).)))))))...))). ( -28.50) >DroSim_CAF1 1607 107 + 1 CAA------------UAUCUGCUGUCAAUAUAAAAUGUGUUAGUUUGACUUUACUUACACUUUAGCAGUGUACGUUUUACAUUUUGGUGGCUCCCAUCCAAGAUAUGAAACUAUAACUA ...------------...((((((............((((.(((........))).))))..))))))((((.((((((.((((((((((...))).))))))).)))))))))).... ( -24.94) >DroYak_CAF1 3547 106 + 1 AAAUUUCAACAGCUUUAUUUGUUUUCAAUUUACAAUGUGU----UUGACC---------UUUUGGCGGUCGAAGUUUUAUAUUUUGGUUCCACCCAACCAAGAUAUACAACUGUAACUA .......(((((......)))))......(((((.....(----((((((---------.......)))))))(((.((((((((((((......)))))))))))).))))))))... ( -24.10) >consensus CAAUGUCUGCAGCUAUAUCUGCUGUCAAUAUAAAAUGUGU____UUGACU_UACUUACACUUUAGCAGUGUAAGUUUUACAUUUUGGUUCCUCCCAUCCAAGAUAUGAAACUGUAACUA ....................((((((((................)))))..............)))(((...(((((((.(((((((..........))))))).)))))))...))). (-12.44 = -12.95 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:21 2006