Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,337,776 – 5,337,883 |
Length | 107 |
Max. P | 0.779311 |
Location | 5,337,776 – 5,337,883 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -11.12 |
Energy contribution | -12.52 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.47 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5337776 107 + 27905053 --UAAACGGGAAACCAAACCAGCGAAAGGGUGCAGAAAUCUCUAGAGUAUUUGGACCUGUGCAGCCCUAGCUUUGCCAGAUCUAAGUACAUAUAACUCACCGAUAACCA --.....((....)).......(....)((((.((...((....))(((((((((.(((.(((((....))..)))))).)))))))))......))))))........ ( -29.70) >DroSec_CAF1 590 107 + 1 --UAAACGGGAAACCAAACCAGCGAAAGGGUGCAGAAAUCUCUAGAGGCUUUGGACCUCUGCACCCCUUUUUAUGCCAGAUCUAACUACAUAUAACUCACCGAUAACCA --.....((....))......(((((((((((((((..(((..((...))..)))..)))))).)))))))...))................................. ( -25.00) >DroSim_CAF1 593 100 + 1 --UAAACGGGAAACCAAACCAGCGAAAGGGUGCAGAAAUCUCUAGAGGAU-------CCUGCACCCCUUUUUAUGCCAGAUCUUACUACAUAUUACUCACCGAUAACCA --.....((....))......((((((((((((((..((((.....))))-------.))))).)))))))...))................................. ( -22.80) >DroEre_CAF1 589 104 + 1 UCAAGA-GGUACCCCAAAACAGCAAAAGAAAGCAGAAAUCUCUAGAGGCUUAAGACCUCUGCACCCUUUGCAAUACCAGAUUUUAGU----AUAACUCACCGAUAACCA ....((-(((((.........((........)).(((((((..((((((....).)))))(((.....)))......))))))).))----))..)))........... ( -17.90) >DroYak_CAF1 569 96 + 1 UUUAUAUGGGAAACCAGAGCAGCGAAAGGGCGCAGAAAUCUCUAGAGACU---------UGCACCCUUUGAAAUACCAGAUUUUAGU----AUAACUCACCGAUAACCA ......(((....)))(((.....((((((.((((...((....))...)---------))).))))))...((((.........))----))..)))........... ( -22.00) >consensus __UAAACGGGAAACCAAACCAGCGAAAGGGUGCAGAAAUCUCUAGAGGCUU__GACCUCUGCACCCCUUGCUAUGCCAGAUCUUAGUACAUAUAACUCACCGAUAACCA .......((....))............((((((((.......................))))))))........................................... (-11.12 = -12.52 + 1.40)
Location | 5,337,776 – 5,337,883 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.01 |
Mean single sequence MFE | -30.52 |
Consensus MFE | -17.82 |
Energy contribution | -19.42 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.27 |
Mean z-score | -1.90 |
Structure conservation index | 0.58 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5337776 107 - 27905053 UGGUUAUCGGUGAGUUAUAUGUACUUAGAUCUGGCAAAGCUAGGGCUGCACAGGUCCAAAUACUCUAGAGAUUUCUGCACCCUUUCGCUGGUUUGGUUUCCCGUUUA-- .......((((((((.......)))))((((..((..(((.((((.((((.((((((..........).))))).))))))))...))).))..))))..)))....-- ( -23.80) >DroSec_CAF1 590 107 - 1 UGGUUAUCGGUGAGUUAUAUGUAGUUAGAUCUGGCAUAAAAAGGGGUGCAGAGGUCCAAAGCCUCUAGAGAUUUCUGCACCCUUUCGCUGGUUUGGUUUCCCGUUUA-- .....((((((((....(((((((......)).)))))...((((((((((((((((..........).)))))))))))))))))))))))..((....)).....-- ( -34.70) >DroSim_CAF1 593 100 - 1 UGGUUAUCGGUGAGUAAUAUGUAGUAAGAUCUGGCAUAAAAAGGGGUGCAGG-------AUCCUCUAGAGAUUUCUGCACCCUUUCGCUGGUUUGGUUUCCCGUUUA-- .....((((((((....(((((((......)).)))))...(((((((((((-------(..((....))..))))))))))))))))))))..((....)).....-- ( -32.70) >DroEre_CAF1 589 104 - 1 UGGUUAUCGGUGAGUUAU----ACUAAAAUCUGGUAUUGCAAAGGGUGCAGAGGUCUUAAGCCUCUAGAGAUUUCUGCUUUCUUUUGCUGUUUUGGGGUACC-UCUUGA ......((((.(((.((.----.(((((((........((((((((.(((((((((((.((...)).)))))))))))..)))))))).)))))))..)).)-)))))) ( -31.90) >DroYak_CAF1 569 96 - 1 UGGUUAUCGGUGAGUUAU----ACUAAAAUCUGGUAUUUCAAAGGGUGCA---------AGUCUCUAGAGAUUUCUGCGCCCUUUCGCUGCUCUGGUUUCCCAUAUAAA .((..(((((.((((.((----((((.....))))))...((((((((((---------(((((....)))))..)))))))))).))).).)))))..))........ ( -29.50) >consensus UGGUUAUCGGUGAGUUAUAUGUACUAAGAUCUGGCAUAACAAGGGGUGCAGAGGUC__AAGCCUCUAGAGAUUUCUGCACCCUUUCGCUGGUUUGGUUUCCCGUUUA__ .....((((((((..............(......)......(((((((((((((((.............)))))))))))))))))))))))..((....))....... (-17.82 = -19.42 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:20 2006