Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 844,830 – 844,966 |
Length | 136 |
Max. P | 0.958781 |
Location | 844,830 – 844,926 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.15 |
Mean single sequence MFE | -35.09 |
Consensus MFE | -28.26 |
Energy contribution | -30.33 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.35 |
Structure conservation index | 0.81 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 844830 96 + 27905053 UGGCUCUUGCUGGCUAAUUUGCCGCAGCAGGCAAUGGAAAUUGUUGAUGUGCAAAAAUUUUGCUGCGU------------------------CGUUGUUGUUGUCGUGUAAAUGCCAUAA ((((..((((.(((......)))((((((((((((....))))))(((((((((.....)))).))))------------------------)..))))))......))))..))))... ( -32.50) >DroSec_CAF1 20594 99 + 1 UGGCUCUUGCUGGCUAAUUUGCCGCAGCAGGCAAUGGAAAUUGUUGAUGUGCAAAAAUGUUGCUGCGCCGC---------------------CGUUGUUGUUGUCGUGUAAGUGCCAUAA ((((.(((((.(((......)))(((((((.((((((...........(((((..........)))))..)---------------------))))))))))))...))))).))))... ( -34.12) >DroSim_CAF1 19821 99 + 1 UGGCUCUUGCUGGCUAAUUUGCCGCAGCAGGCAAUGGAAAUUGUUGAUGUGCAAAAAUGUUGCUGCGCCGC---------------------CGUUGUUGUUGUCGUGUAAGUGCCAUAA ((((.(((((.(((......)))(((((((.((((((...........(((((..........)))))..)---------------------))))))))))))...))))).))))... ( -34.12) >DroEre_CAF1 21690 120 + 1 UGGCUGUUGCUGGCUAAUUUGCCGCGGCGGGCAAUGGAAAUUGUUGAUGUGCAAAAAUGUUGCUGCGCCGCUUUGUUGUUGUUGCGUUGUUGCGUUGUUGUUGUCGUGUAAAUGCCAUAA ((((..((((.(((......)))((((((((((((....)))))).....((((.(((((.((.((((.((.........)).)))).)).))))).))))))))))))))..))))... ( -39.60) >consensus UGGCUCUUGCUGGCUAAUUUGCCGCAGCAGGCAAUGGAAAUUGUUGAUGUGCAAAAAUGUUGCUGCGCCGC_____________________CGUUGUUGUUGUCGUGUAAAUGCCAUAA ((((.(((((.(((......)))(((((.((((((....))))))(((((......)))))))))).........................................))))).))))... (-28.26 = -30.33 + 2.06)
Location | 844,830 – 844,926 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.15 |
Mean single sequence MFE | -23.75 |
Consensus MFE | -19.56 |
Energy contribution | -20.38 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -2.06 |
Structure conservation index | 0.82 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.917693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 844830 96 - 27905053 UUAUGGCAUUUACACGACAACAACAACG------------------------ACGCAGCAAAAUUUUUGCACAUCAACAAUUUCCAUUGCCUGCUGCGGCAAAUUAGCCAGCAAGAGCCA ...((((.....................------------------------..(((((((((((.(((.....))).)))))........))))))(((......))).......)))) ( -20.10) >DroSec_CAF1 20594 99 - 1 UUAUGGCACUUACACGACAACAACAACG---------------------GCGGCGCAGCAACAUUUUUGCACAUCAACAAUUUCCAUUGCCUGCUGCGGCAAAUUAGCCAGCAAGAGCCA ...((((.(((.(...............---------------------((((((..((((.....(((........)))......)))).))))))(((......))).).))).)))) ( -23.70) >DroSim_CAF1 19821 99 - 1 UUAUGGCACUUACACGACAACAACAACG---------------------GCGGCGCAGCAACAUUUUUGCACAUCAACAAUUUCCAUUGCCUGCUGCGGCAAAUUAGCCAGCAAGAGCCA ...((((.(((.(...............---------------------((((((..((((.....(((........)))......)))).))))))(((......))).).))).)))) ( -23.70) >DroEre_CAF1 21690 120 - 1 UUAUGGCAUUUACACGACAACAACAACGCAACAACGCAACAACAACAAAGCGGCGCAGCAACAUUUUUGCACAUCAACAAUUUCCAUUGCCCGCCGCGGCAAAUUAGCCAGCAACAGCCA ...((((....................((......))............((((((..((((.....(((........)))......)))).))))))(((......))).......)))) ( -27.50) >consensus UUAUGGCACUUACACGACAACAACAACG_____________________GCGGCGCAGCAACAUUUUUGCACAUCAACAAUUUCCAUUGCCUGCUGCGGCAAAUUAGCCAGCAAGAGCCA ...((((.(((.(....................................((((((..((((.....(((........)))......)))).))))))(((......))).).))).)))) (-19.56 = -20.38 + 0.81)
Location | 844,870 – 844,966 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.06 |
Mean single sequence MFE | -20.66 |
Consensus MFE | -15.68 |
Energy contribution | -16.93 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.76 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.858222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 844870 96 - 27905053 UUUUAAUUCCGCUCCGCUGUGUCUGUUGACACAAACUAAUUUAUGGCAUUUACACGACAACAACAACG------------------------ACGCAGCAAAAUUUUUGCACAUCAACAA ...............(((((((((((((................................)))))..)------------------------)))))))..................... ( -15.45) >DroSec_CAF1 20634 99 - 1 UUUUAAUUCCGCUCCGCUGUGUCUGUUGACACAAACUAAUUUAUGGCACUUACACGACAACAACAACG---------------------GCGGCGCAGCAACAUUUUUGCACAUCAACAA ..........((.(((((((...(((((.............................)))))...)))---------------------)))).)).((((.....)))).......... ( -21.55) >DroSim_CAF1 19861 99 - 1 UUUUAAUUCCGCUCCGCUGUGUCUGUUGACACAAACUAAUUUAUGGCACUUACACGACAACAACAACG---------------------GCGGCGCAGCAACAUUUUUGCACAUCAACAA ..........((.(((((((...(((((.............................)))))...)))---------------------)))).)).((((.....)))).......... ( -21.55) >DroEre_CAF1 21730 120 - 1 UUUUAAUUCCGCUCCGCUAUGUCUGUUGACACAAACUAAUUUAUGGCAUUUACACGACAACAACAACGCAACAACGCAACAACAACAAAGCGGCGCAGCAACAUUUUUGCACAUCAACAA ..........((.(((((.(((.(((((............(..((.......))..)..........((......))..)))))))).))))).)).((((.....)))).......... ( -24.10) >consensus UUUUAAUUCCGCUCCGCUGUGUCUGUUGACACAAACUAAUUUAUGGCACUUACACGACAACAACAACG_____________________GCGGCGCAGCAACAUUUUUGCACAUCAACAA ..........((.((((((((((....)))))).......(..((.......))..)................................)))).)).((((.....)))).......... (-15.68 = -16.93 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:36 2006