Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,331,097 – 5,331,199 |
Length | 102 |
Max. P | 0.971317 |
Location | 5,331,097 – 5,331,199 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 74.58 |
Mean single sequence MFE | -36.06 |
Consensus MFE | -19.58 |
Energy contribution | -18.56 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.43 |
Mean z-score | -2.22 |
Structure conservation index | 0.54 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.971317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5331097 102 + 27905053 ------CCCGCUG--UGGCCAACACUGCAACCGCAGUGGCAGUGGCCAUCAAUAAAUCCUCUAGUGCCUCCAUUACGGCCAACAAAGGUAACAAGGAAACCGAGGAGCAG ------...((.(--((((((.((((((....))))))....))))))).......(((((..(.(((........))))......(((.........)))))))))).. ( -36.70) >DroSec_CAF1 7639 102 + 1 ------CCAGCUG--UGGCCAAAACUGCAAACGCAGUGGCAGUGGCAAUCAAUAAAUCCUCUAGUGCCUCCAUUACGGCCAACAAGGGUAACAAGGAGACCGAGGAGCAG ------....(((--(.((((..(((((....))))).....))))..........(((((..((..((((......(((......))).....)))))).))))))))) ( -30.20) >DroEre_CAF1 7829 108 + 1 GCCGCACCCGCUG--UGGCCACCACUGCAACCGCAGUUGCUGCAGCCAUCAAUAAAUCCUCUAGUGCCUCCAUUACGGCCAACAAGGGCAAUAAGGAGACGGAGGAGCAG ...((....((((--..((....(((((....))))).))..))))..........((((((.((..((((.(((..(((......)))..))))))))))))))))).. ( -40.50) >DroYak_CAF1 573 108 + 1 GCUGCUCCCGCUG--UGGCCACCACUGCAACCGCAGUUGCUGCGGCCAUCAGUAAAUCCUCUAGUGCCUCGAUUACAGCCAACAAAGGCAACAAGGAGACGGAGGAGCAG (((.((((.((((--(((((.(.(((((....)))))....).))))).))))...((((....(((((................)))))...))))...)))).))).. ( -41.79) >DroMoj_CAF1 9144 105 + 1 GCGAAAGCCGCUG--CUGCUUCAGCUGC---AACUGCUUCAUCAGCGGUCAACAAGUCUUCGUCGGCUUCAAUAAAGGCCAACAAGGGCAACAAGGAAACGGAGGAACAG ((....)).((.(--(((...)))).))---.((((((.....)))))).......(((((((.(((((......))))).))...(....)..(....).))))).... ( -31.00) >DroAna_CAF1 8661 99 + 1 ------CCCGCAGCAUCGCCA--GCUGC---GGCUGGUGCAGCUGCUGUAAACAAAUCGUCUAGCGCCUCCAUUACCGACAACAAGGGCAACAAGGAGACGGACGAACAG ------...(((((..(((((--((...---.)))))))..)))))..........((((((..(.(((......((........))......))).)..)))))).... ( -36.20) >consensus ______CCCGCUG__UGGCCACCACUGCAACCGCAGUUGCAGCGGCCAUCAAUAAAUCCUCUAGUGCCUCCAUUACGGCCAACAAGGGCAACAAGGAGACGGAGGAGCAG .........((((....((....(((((....))))).))..))))..........(((((....((((................)))).....(....).))))).... (-19.58 = -18.56 + -1.02)
Location | 5,331,097 – 5,331,199 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 74.58 |
Mean single sequence MFE | -39.50 |
Consensus MFE | -24.63 |
Energy contribution | -25.05 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.33 |
Mean z-score | -1.66 |
Structure conservation index | 0.62 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5331097 102 - 27905053 CUGCUCCUCGGUUUCCUUGUUACCUUUGUUGGCCGUAAUGGAGGCACUAGAGGAUUUAUUGAUGGCCACUGCCACUGCGGUUGCAGUGUUGGCCA--CAGCGGG------ (((((((((.(((((((((...((......))...))).))))))....))))).....((.((((((....((((((....)))))).))))))--)))))).------ ( -39.60) >DroSec_CAF1 7639 102 - 1 CUGCUCCUCGGUCUCCUUGUUACCCUUGUUGGCCGUAAUGGAGGCACUAGAGGAUUUAUUGAUUGCCACUGCCACUGCGUUUGCAGUUUUGGCCA--CAGCUGG------ ..(((((((.((((((..(((((((.....))..)))))))))))....)))))..........((((.....(((((....)))))..))))..--..))...------ ( -31.70) >DroEre_CAF1 7829 108 - 1 CUGCUCCUCCGUCUCCUUAUUGCCCUUGUUGGCCGUAAUGGAGGCACUAGAGGAUUUAUUGAUGGCUGCAGCAACUGCGGUUGCAGUGGUGGCCA--CAGCGGGUGCGGC ....(((((.((((((((((.(((......))).)))).))))))....)))))..........((((((.(..(((.(((..(....)..))).--)))..).)))))) ( -46.00) >DroYak_CAF1 573 108 - 1 CUGCUCCUCCGUCUCCUUGUUGCCUUUGUUGGCUGUAAUCGAGGCACUAGAGGAUUUACUGAUGGCCGCAGCAACUGCGGUUGCAGUGGUGGCCA--CAGCGGGAGCAGC ((((((((.....(((((..((((((.((((....)))).))))))...)))))....(((.(((((((....(((((....))))).)))))))--))).)))))))). ( -51.40) >DroMoj_CAF1 9144 105 - 1 CUGUUCCUCCGUUUCCUUGUUGCCCUUGUUGGCCUUUAUUGAAGCCGACGAAGACUUGUUGACCGCUGAUGAAGCAGUU---GCAGCUGAAGCAG--CAGCGGCUUUCGC ..........(((..(..(((....((((((((.((....)).)))))))).)))..)..)))(((((.((...((((.---...))))...)).--)))))........ ( -29.10) >DroAna_CAF1 8661 99 - 1 CUGUUCGUCCGUCUCCUUGUUGCCCUUGUUGUCGGUAAUGGAGGCGCUAGACGAUUUGUUUACAGCAGCUGCACCAGCC---GCAGC--UGGCGAUGCUGCGGG------ ....((((((((((((..((((((.........)))))))))))))...)))))..........(((((..(.(((((.---...))--))).)..)))))...------ ( -39.20) >consensus CUGCUCCUCCGUCUCCUUGUUGCCCUUGUUGGCCGUAAUGGAGGCACUAGAGGAUUUAUUGAUGGCCGCUGCAACUGCGGUUGCAGUGGUGGCCA__CAGCGGG______ (((((((((.(((((((((..(((......)))..))).))))))....)))))..........((((.....(((((....)))))..))))......))))....... (-24.63 = -25.05 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:15 2006