| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,327,391 – 5,327,486 |
| Length | 95 |
| Max. P | 0.529982 |
| Location | 5,327,391 – 5,327,486 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.88 |
| Mean single sequence MFE | -16.48 |
| Consensus MFE | -11.15 |
| Energy contribution | -11.15 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.68 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5327391 95 - 27905053 AAUACA-------AUCCAUAAUGUCGCUAAUCAAUUCAUUGCGACCUAUG------------------GCACAAUAAACACUCCGCAUUAACCUCAAUUAAUUUACCUAAUUGGCAGCGC ......-------..(((((..(((((.............))))).))))------------------)..............(((.......(((((((.......)))))))..))). ( -14.22) >DroSim_CAF1 32947 95 - 1 AAUACA-------AUCCAUAAUGUCGCUAAUCAAUUCAUUGCGACCUAUG------------------GCACAAUAAACACUCCGCAUUAACCUCAAUUAAUUUAACUAAUUGGCCGCGC ......-------..(((((..(((((.............))))).))))------------------)..............(((.......(((((((.......)))))))..))). ( -14.22) >DroYak_CAF1 32770 120 - 1 AAUACACUCCAUAAUCCAUAAUGUCGCUAAUCAAUUCAUUGCGACCUAUGGCACCUAUGGCAUCGAUGGCACAAUAAACACUCCGCAUUAACCUCAAUUAAUUUAACUAAUUGGCCGCGC ........(((((..(((((..(((((.............))))).)))))....)))))...((.((((.((((..................................)))))))))). ( -21.00) >consensus AAUACA_______AUCCAUAAUGUCGCUAAUCAAUUCAUUGCGACCUAUG__________________GCACAAUAAACACUCCGCAUUAACCUCAAUUAAUUUAACUAAUUGGCCGCGC ................((((..(((((.............))))).)))).................................(((.......(((((((.......)))))))..))). (-11.15 = -11.15 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006