Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,324,767 – 5,324,857 |
Length | 90 |
Max. P | 0.999924 |
Location | 5,324,767 – 5,324,857 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.21 |
Mean single sequence MFE | -27.03 |
Consensus MFE | -18.51 |
Energy contribution | -18.07 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.38 |
Structure conservation index | 0.68 |
SVM decision value | 4.59 |
SVM RNA-class probability | 0.999924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5324767 90 + 27905053 GUUAGGUAUUCGUAUUCGUAU------------------------------UCAUCUUGUGAGUGGGAAUUCUUGGGGUACCCGUUUAAGCAGAAAACUCAUGCGAAUACCAGGAAUUAU ....(((((((((((((.(((------------------------------((((...))))))).)))((((.(((...)))((....))))))......))))))))))......... ( -25.60) >DroSim_CAF1 30431 80 + 1 GUUAGGUAUUCGUAUUCGUAU------------------------------UCGUAUUC----------AUCUUGGGGUACCCGCUUAAGCAGAAAACUCAUGCGAAUACCAGGAAUUAU ....(((((((((((..((.(------------------------------((((((((----------......))))))..((....)).))).))..)))))))))))......... ( -24.60) >DroYak_CAF1 29871 120 + 1 GUUAGGUAUUCGUAUUCAUAUUCGUAUUUGUAUUCGUCUUUGUAUUCGUAUUCAUAUUGCGAGUGGGAAUUCUUGGGGUAUCCGCUUAAGCAGAAAACUCAUGCGAAUACCAGGAAUUAU ....(((((((((((((.((((((((..((....((..........))....))...)))))))).)))....((((...((.((....)).))...))))))))))))))......... ( -30.90) >consensus GUUAGGUAUUCGUAUUCGUAU______________________________UCAUAUUG_GAGUGGGAAUUCUUGGGGUACCCGCUUAAGCAGAAAACUCAUGCGAAUACCAGGAAUUAU ....(((((((((((...........................................................(((...)))((....)).........)))))))))))......... (-18.51 = -18.07 + -0.44)
Location | 5,324,767 – 5,324,857 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.21 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -16.67 |
Energy contribution | -17.00 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.84 |
SVM decision value | 3.87 |
SVM RNA-class probability | 0.999671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5324767 90 - 27905053 AUAAUUCCUGGUAUUCGCAUGAGUUUUCUGCUUAAACGGGUACCCCAAGAAUUCCCACUCACAAGAUGA------------------------------AUACGAAUACGAAUACCUAAC .........((((((((.((..((.(((..(((....(((...)))..((........))..)))..))------------------------------).))..)).)))))))).... ( -18.40) >DroSim_CAF1 30431 80 - 1 AUAAUUCCUGGUAUUCGCAUGAGUUUUCUGCUUAAGCGGGUACCCCAAGAU----------GAAUACGA------------------------------AUACGAAUACGAAUACCUAAC .........((((((((.((..((.(((.((....))(((...))).....----------......))------------------------------).))..)).)))))))).... ( -19.80) >DroYak_CAF1 29871 120 - 1 AUAAUUCCUGGUAUUCGCAUGAGUUUUCUGCUUAAGCGGAUACCCCAAGAAUUCCCACUCGCAAUAUGAAUACGAAUACAAAGACGAAUACAAAUACGAAUAUGAAUACGAAUACCUAAC ...((((..(((((((((.(((((.....))))).)))))))))....(.((((....(((..((.((.((.((..........)).)).)).)).)))....)))).)))))....... ( -21.20) >consensus AUAAUUCCUGGUAUUCGCAUGAGUUUUCUGCUUAAGCGGGUACCCCAAGAAUUCCCACUC_CAAUAUGA______________________________AUACGAAUACGAAUACCUAAC .........(((((((((.(((((.....))))).))((.....))...............................................................))))))).... (-16.67 = -17.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:07 2006