Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,323,341 – 5,323,456 |
Length | 115 |
Max. P | 0.738027 |
Location | 5,323,341 – 5,323,456 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.68 |
Mean single sequence MFE | -46.83 |
Consensus MFE | -42.35 |
Energy contribution | -42.47 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.91 |
Structure conservation index | 0.90 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5323341 115 + 27905053 ----UUACUA-ACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGUUUGGUGCCCACGAGAACCACGGGAACGUGGGCGGAGAAGUGACGGAUCUCCGGCCAC ----......-..........((((((....(((((((((.((.(((...((....))((.....))..))))).....(((((....))))).)))))))))...((....)))))))) ( -43.70) >DroSim_CAF1 29011 115 + 1 ----UUACUA-ACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGUUUGGUGCCCACCAGAACCACGGGAACAUGGGCGGAGAAGUGACGGAUCUCCGGCCAC ----......-..........((((((....(((((((((..((((....((....))))))((((((....)))))).(((.(....).))).)))))))))...((....)))))))) ( -39.70) >DroYak_CAF1 28483 120 + 1 GGGGUGAUGACACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGCUUGGUGCCCACCAGGACCACGGGAACGUGGGCGGAGAAGUGGCGGAUCUCCGGCCAC ...(((((.((((......)))).)))))..(((((((((((((((....((....))))))))((((....))))...(((((....))))).)))))))))(((((....)).))).. ( -57.10) >consensus ____UUACUA_ACUAACCUGUGUGGUCACGAACUUCUCCGAGUUGGGAAUGCGCAAGUCCAGUUUGGUGCCCACCAGAACCACGGGAACGUGGGCGGAGAAGUGACGGAUCUCCGGCCAC .....................((((((....(((((((((...((((...((.((((.....)))))).))))......(((((....))))).)))))))))...((....)))))))) (-42.35 = -42.47 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:06 2006