Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,317,338 – 5,317,428 |
Length | 90 |
Max. P | 0.536474 |
Location | 5,317,338 – 5,317,428 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.40 |
Mean single sequence MFE | -15.32 |
Consensus MFE | -2.44 |
Energy contribution | -3.32 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.27 |
Mean z-score | -1.67 |
Structure conservation index | 0.16 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5317338 90 - 27905053 CCGAUGCUAUAAAACAUUUAUA-----------------------------AUUCUGCCUUGCUUUAAAUACUGCUUUCAUACGGAACACUCUUUCUACUUCAAUUAUUC-UUAAUCCAU ((((((.(((((.....)))))-----------------------------..........((..........))...))).))).........................-......... ( -4.30) >DroSec_CAF1 21640 90 - 1 CCGAUGUUAUAUAAUAUAUAUA-----------------------------AUUCUGCCUUGGAUUAAAGACUGCUUUUAUGCGGAGCACUCUUUCUACUUCAAUUAUUC-UUAAUCCAU ..((.((((((((...))))))-----------------------------)))).....(((((((((((.((((((.....)))))).))).................-)))))))). ( -15.42) >DroSim_CAF1 22902 91 - 1 GCGAUGUUAUAUAAUAUAUAUA-----------------------------AUUCUGCCUUGGAUUAAAGACUGCUUUUAUGCGGAGCACUCUUUCUACUUCAAUUAUUCCUUAAUCCAU (((..((((((((...))))))-----------------------------))..)))..(((((((((((.((((((.....)))))).)))..................)))))))). ( -18.46) >DroEre_CAF1 24135 107 - 1 CCAAAGUCAUAAAACAUUGUUAUA------------UCUAACAAUCUAUCCAUAUUGCCUUUAAUUGAAGGCUGGCUUUAUGCGGAACACUCUUUUUACUCCAAUUAUUC-CUAAUCCAU ..(((((((......(((((((..------------..)))))))...........((((((....)))))))))))))....(((.............)))........-......... ( -17.72) >DroYak_CAF1 22269 119 - 1 CGGAUGUUGUAAAACAUUUUUAUGGAUAUAUAACACUCUAUUCAUAUUUCAUUGCUGCCUUGAACUAAAGGCUGUCUUUAUGCGGAACACUCUCGCCACUUCAAUUAUUC-UUAAUCCAU .((((...((((((((....((((((((..........))))))))..........(((((......)))))))).)))))(((((....)).)))..............-...)))).. ( -20.70) >consensus CCGAUGUUAUAAAACAUUUAUA_____________________________AUUCUGCCUUGAAUUAAAGACUGCUUUUAUGCGGAACACUCUUUCUACUUCAAUUAUUC_UUAAUCCAU ..................................................................(((((.((((((.....)))))).)))))......................... ( -2.44 = -3.32 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:05 2006