Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,316,818 – 5,316,918 |
Length | 100 |
Max. P | 0.605812 |
Location | 5,316,818 – 5,316,918 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -19.22 |
Consensus MFE | -13.02 |
Energy contribution | -14.08 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.38 |
Structure conservation index | 0.68 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5316818 100 + 27905053 CCAGCGUCUGCUGGCAACCUCCGCCAGCAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUUCGAGCAAUCCCCAAAGACACCCGACCACCCCG .....((((((((((.......))))))...................(((..(.((((((.........)))))).)..))))))).............. ( -24.30) >DroSec_CAF1 21089 100 + 1 CCAGCGUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUUCGAGCAAUCCCCAAAGACACCCGACCACCCGC ...(((..(((((((.......))))))).................((.((((.((((((.........))))))((......))....)))).)).))) ( -22.40) >DroEre_CAF1 23633 96 + 1 CCAGCGUCUGCUGGCAACCUUCGCCAGUAAGAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCCCCCCC---- .....((((((((((.......))))))...................(((..(.((((((.........)))))).)..)))))))..........---- ( -22.10) >DroWil_CAF1 24694 85 + 1 CAACCGUCUGCUGGCAACCUUCUCCAGUAACAUCAAUGUUUUGCUUCUUGUCGUUUGCUCUGCCAUCUU--------CU-------UCUCUACCACCCAU .........((.(((((.(..(...(((((((....)))..))))....)..).)))))..))......--------..-------.............. ( -7.20) >DroYak_CAF1 21740 100 + 1 CCAGCGUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACACCACCUCCCCC ...(.((((((((((.......))))))...................(((..(.((((((.........)))))).)..))))))).)............ ( -22.40) >DroAna_CAF1 22187 92 + 1 CCAGCGUCGGCUGGCAACCUCCUUCAGUAACAUCAAUGUUUUGCUUGUUGUCGCUUGCUUUUCCAUUCCAAGCAGUCCCGU-----CCCCAACUAA---C ..((((.((((.(((((...........((((....))))))))).)))).))))(((((.........))))).......-----..........---. ( -16.90) >consensus CCAGCGUCUGCUGGCAACCUCCGCCAGUAACAUCAAUGUUUUGCUUGUUGUCGUUUGCUCUUCCAUUCCGAGCAAUCCCCAAAGACACCCCACCACCC_C ..((((.(.((((((.......))))))((((.(((....)))..))))).))))(((((.........))))).......................... (-13.02 = -14.08 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:04 2006