Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 844,630 – 844,750 |
Length | 120 |
Max. P | 0.958029 |
Location | 844,630 – 844,750 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -29.98 |
Energy contribution | -30.22 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -2.77 |
Structure conservation index | 0.83 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.958029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 844630 120 + 27905053 UCUAUAAUUUAAGCAGAAAACAAGCGACAGAUACAUGCAGCAGCGCAACUGCAACUGUAACUGCGACUGCGACUGCAGGCAAAUCUCUUGCAGUUUCUUUCCUUUGCCGCUGUUGCGAAA .......................(((((((......(((((((((((..(((....)))..)))).))))(((((((((.......))))))))).........)))..))))))).... ( -37.20) >DroSec_CAF1 20394 120 + 1 UCUAUAAUUUAAGCAGAAAACAAGCGACAGAUACAUGCAGCAGCGCAACUGCAACUGCAACUGCGACUGCGGCUGCAGGCAAAUCUCUUGCAGUUUCUUUCCUUCGCCGCUGUUGCGAAA .......................(((((((......((.((((((((..(((....)))..)))).))))(((((((((.......)))))))))..........))..))))))).... ( -38.10) >DroSim_CAF1 19621 120 + 1 UCUAUAAUUUAAGCAGAAAACAAGCGACAGAUACAUGCAGCAGCGCAACUGCAACUGCAACUGCGACUGCGGCUGCAGGCAAAUCUCUUGCAGUUUCUUUCCUUCGCCGCUGUUGCGAAA .......................(((((((......((.((((((((..(((....)))..)))).))))(((((((((.......)))))))))..........))..))))))).... ( -38.10) >DroEre_CAF1 21516 108 + 1 UCUAUAAUUUAAGCAGAAAACAAGCGACAGAUACAUGCAGCAGCGCAACUGCAACUGCAAC------------UGCAGGCAAAUCUCUUGCAGUUUCUUUCCUUUGCUGCAGUUGCGAAA .......................((..((......))..))..((((((((((...(((((------------((((((.......))))))))..........)))))))))))))... ( -30.60) >consensus UCUAUAAUUUAAGCAGAAAACAAGCGACAGAUACAUGCAGCAGCGCAACUGCAACUGCAACUGCGACUGCGGCUGCAGGCAAAUCUCUUGCAGUUUCUUUCCUUCGCCGCUGUUGCGAAA ..............(((((....((((.((((...(((.((((.....))))..(((((.((((....)))).)))))))).)))).))))..)))))....(((((.......))))). (-29.98 = -30.22 + 0.25)
Location | 844,630 – 844,750 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -37.10 |
Consensus MFE | -29.42 |
Energy contribution | -30.43 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.79 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 844630 120 - 27905053 UUUCGCAACAGCGGCAAAGGAAAGAAACUGCAAGAGAUUUGCCUGCAGUCGCAGUCGCAGUUACAGUUGCAGUUGCGCUGCUGCAUGUAUCUGUCGCUUGUUUUCUGCUUAAAUUAUAGA ..((((....))))..(((...(((((..(((((.(((.(((.(((((((((((..((((......))))..)))))..)))))).)))...))).)))))))))).))).......... ( -36.80) >DroSec_CAF1 20394 120 - 1 UUUCGCAACAGCGGCGAAGGAAAGAAACUGCAAGAGAUUUGCCUGCAGCCGCAGUCGCAGUUGCAGUUGCAGUUGCGCUGCUGCAUGUAUCUGUCGCUUGUUUUCUGCUUAAAUUAUAGA ((((((.......))))))...(((((..(((((.(((.(((.((((((...((.((((..(((....)))..)))))))))))).)))...))).)))))))))).............. ( -40.50) >DroSim_CAF1 19621 120 - 1 UUUCGCAACAGCGGCGAAGGAAAGAAACUGCAAGAGAUUUGCCUGCAGCCGCAGUCGCAGUUGCAGUUGCAGUUGCGCUGCUGCAUGUAUCUGUCGCUUGUUUUCUGCUUAAAUUAUAGA ((((((.......))))))...(((((..(((((.(((.(((.((((((...((.((((..(((....)))..)))))))))))).)))...))).)))))))))).............. ( -40.50) >DroEre_CAF1 21516 108 - 1 UUUCGCAACUGCAGCAAAGGAAAGAAACUGCAAGAGAUUUGCCUGCA------------GUUGCAGUUGCAGUUGCGCUGCUGCAUGUAUCUGUCGCUUGUUUUCUGCUUAAAUUAUAGA ....((((((((((((((...................)))).)))))------------)))))....((((..(((..((.(((......))).)).)))...))))............ ( -30.61) >consensus UUUCGCAACAGCGGCAAAGGAAAGAAACUGCAAGAGAUUUGCCUGCAGCCGCAGUCGCAGUUGCAGUUGCAGUUGCGCUGCUGCAUGUAUCUGUCGCUUGUUUUCUGCUUAAAUUAUAGA ..((((....))))..(((...(((((..(((((.(((.((((((((((.((....)).))))))).((((((......)))))).)))...))).)))))))))).))).......... (-29.42 = -30.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:34 2006