Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,313,899 – 5,314,016 |
Length | 117 |
Max. P | 0.975746 |
Location | 5,313,899 – 5,314,016 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 69.02 |
Mean single sequence MFE | -20.84 |
Consensus MFE | -5.75 |
Energy contribution | -7.07 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.28 |
Mean z-score | -2.37 |
Structure conservation index | 0.28 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5313899 117 + 27905053 CUACUUUUAAGCAUCAAUAGGCUUAACAAAAUGCACGCAAACGUAACGCUGUAAUGCUUACAAUGCCUAUAUAAAUAUAUAUUCAAAAGUGG-AUGAAAACCAUUUUAGCUUAA-AAUA ....((((((((....((((((.........((....))...((((.((......))))))...))))))...............(((((((-.(....)))))))).))))))-)).. ( -25.80) >DroSec_CAF1 18331 100 + 1 CUACUUUUAAGCAUCAAUAGGCUUAACAACAUGCACAUAAACG-----------------CGAUGCCUAUAUAAA-AUACAUUCAAAAGUGGGAUGAAAAGCAUUUUAGCUUAA-AAUA ....((((((((....((((((.........(((........)-----------------))..)))))).....-...(((((.......)))))............))))))-)).. ( -17.80) >DroSim_CAF1 19413 100 + 1 CUACUUUUAAGCAUCAAUAGGCUUAACAACAUGCACAUAAACG-----------------CAAUGCCUGUAUAAA-AUACAUUCAAAAGUGGAAUGAAAAGCAUUUUAGCUUAA-AAUA ....((((((((....((((((.........(((........)-----------------))..)))))).....-...(((((.......)))))............))))))-)).. ( -19.00) >DroEre_CAF1 18693 95 + 1 CUACUUUUAAGCAUCAAUAGGAUUAUC---GUG------------------UAAUGCUUCAAGGACCUACACCAA-AUAUAGUCUUAGGUG-AAUGGAAAGCGUUUAAGCUUAA-AAAA ....((((((((.....(((((((((.---(((------------------((...((....))...)))))...-..)))))))))..((-((((.....)))))).))))))-)).. ( -20.40) >DroYak_CAF1 18638 104 + 1 CUACUUUUAAGGUUCAACGGGAUUGUG---AUGUACGCCAACG--------UAAUGCUUGAAACAACUGCAUAAA-GCAUAGUCUAAAG---GUUGAAAAGCAUUUAAGCUUAAUAAAA ............((((((.((((((((---...((((....))--------))((((...........))))...-.))))))))....---))))))((((......))))....... ( -21.20) >consensus CUACUUUUAAGCAUCAAUAGGCUUAACAA_AUGCACACAAACG________UAAUGCUU_CAAUGCCUAUAUAAA_AUAUAUUCAAAAGUGGAAUGAAAAGCAUUUUAGCUUAA_AAUA ......((((((.....(((((..........................................)))))....................(((((((.....)))))))))))))..... ( -5.75 = -7.07 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:03 2006