Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,300,295 – 5,300,385 |
Length | 90 |
Max. P | 0.618337 |
Location | 5,300,295 – 5,300,385 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 86.11 |
Mean single sequence MFE | -20.26 |
Consensus MFE | -15.30 |
Energy contribution | -14.70 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.29 |
Mean z-score | -1.64 |
Structure conservation index | 0.76 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5300295 90 - 27905053 AAAUAUAUUUAC----AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG ............----((((((.....)))))).......((((......))))......(((.((((.....))))((((....))))..))) ( -17.60) >DroSec_CAF1 4859 86 - 1 AAGUAUAU--------AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG ..(.((((--------((((((.....)))))))))).).((((......))))......(((.((((.....))))((((....))))..))) ( -22.70) >DroSim_CAF1 4474 86 - 1 AAGUAUAU--------AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG ..(.((((--------((((((.....)))))))))).).((((......))))......(((.((((.....))))((((....))))..))) ( -22.70) >DroEre_CAF1 4696 92 - 1 UACUAUGU--ACUACAGUGCGAGUACAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUACCAACAUGUCGUG ((((.(((--((....)))))))))..((((.........((((......))))..........((((.....)))).......))))...... ( -18.40) >DroYak_CAF1 4543 89 - 1 UUGUAUAU--GGUAUAGUGUAUAUA---UGUACAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGUG .......(--(((((.((((((...---.)))))).....((((......))))..........((((.....)))).)))))).......... ( -19.90) >consensus AAGUAUAU________AUACAUAUAUAGUGUAUAUAUCCGUGGCCUAAUCGCCAAUUUAUCGCCGCUCAUUCUGAGCCAUGCCAACAUGUCGCG ................((((((.....)))))).......((((......))))......(((.((((.....))))((((....))))..))) (-15.30 = -14.70 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:01 2006