| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,283,628 – 5,283,725 |
| Length | 97 |
| Max. P | 0.780717 |
| Location | 5,283,628 – 5,283,725 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 79.08 |
| Mean single sequence MFE | -14.83 |
| Consensus MFE | -12.04 |
| Energy contribution | -11.98 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5283628 97 - 27905053 ACAAAUAGAAUUUUCCGACCCCAACUGCAAAGCGCCGUAAGACGAAAAAGUGAAUUGCAGUUCGUAAACCAGGCACAAGACAAACUAAGAACUUAAA------- .....(((..............((((((((..(((((.....)).....)))..)))))))).((.......))..........)))..........------- ( -11.70) >DroVir_CAF1 2088 88 - 1 ACAAAUAGAAUUUUCCGACGACAACUGCAAAACGCCGUAAAACGAAGAAGUGAAUUGCAGUUCGUAAAAAAAGC-----AAAUAUAUGUAU----AA------- (((.(((...((((...((((..(((((((..(((((.....)).....)))..)))))))))))...))))..-----...))).)))..----..------- ( -15.60) >DroGri_CAF1 3803 86 - 1 ACAAAUAGAAUUUUCCGACGACAACUGCAAAGCGCCGUAAAACAAAAAAGUGAAUUGCAGUUCGUAAAAA--GA-----AAACAUUAAGAA----AA------- ..........(((((..((((..(((((((..(((..(........)..)))..))))))))))).....--))-----))).........----..------- ( -15.50) >DroEre_CAF1 6900 97 - 1 ACAAAUAGAAUUUUCCGACGACAACUGCAAAGCGCCGUAAGACGAAAAAGUGAAUUGCAGUUCGUAAACCAGGCACAGGACAAACUAAGAACUUAAA------- .....(((.........((((..(((((((..(((((.....)).....)))..)))))))))))...((.......)).....)))..........------- ( -16.00) >DroYak_CAF1 1739 97 - 1 ACAAAUAGAAUUUUCCGACGACAACUGCAAAGCGCCGUAAGACGAAAAAGUGAAUUGCAGUUCGUAAACCAGGCACAGGACAAACUAAGAACUUAAA------- .....(((.........((((..(((((((..(((((.....)).....)))..)))))))))))...((.......)).....)))..........------- ( -16.00) >DroMoj_CAF1 1584 94 - 1 ACAAAUAGAAUUUUCCGAUGACAACUGCAAAACGCCGUAAAACUAAAAAGUGACUUGCAGUUUGUAACACACA------UAGUACAUCUAU----AACAGGCGA ................((((((((((((((..(((..(........)..)))..))))))))(((.....)))------..)).))))...----......... ( -14.20) >consensus ACAAAUAGAAUUUUCCGACGACAACUGCAAAGCGCCGUAAAACGAAAAAGUGAAUUGCAGUUCGUAAAACAGGC_____AAAAACUAAGAA____AA_______ .................((((..(((((((..(((..(........)..)))..)))))))))))....................................... (-12.04 = -11.98 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:54 2006