Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,252,328 – 5,252,422 |
Length | 94 |
Max. P | 0.991547 |
Location | 5,252,328 – 5,252,422 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 66.20 |
Mean single sequence MFE | -37.08 |
Consensus MFE | -17.02 |
Energy contribution | -18.05 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.23 |
Mean z-score | -2.43 |
Structure conservation index | 0.46 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5252328 94 - 27905053 AUUCCGGAAUCCG-------GAACCCAGAGUCACUGGAGUCACUGGGCAUUUUU-GUUACGCCCCCGCUCUCAACCGUAGGGAUAAGUAGGGGGUGUGGCAC .((((((...)))-------)))(((((.(.(......).).)))))......(-(((((((((((...((...((....))...))..)))))))))))). ( -38.80) >DroSec_CAF1 26102 80 - 1 AUUCCGGAUUC---------------------ACUGGAGUCACUGGGCAUUUUU-GUAACGCCCCCGCUCUCAACAGUGAGGAUAAGUAGGGGGCGUGGCAC ..(((((....---------------------.)))))(((((...(((....)-))...(((((((((((((....))))....))).))))))))))).. ( -31.00) >DroSim_CAF1 26206 85 - 1 AUUCCGGAAUCCG-------UAC---------UCCGGAGUCACUGGGCAUUUUU-GUAACGCCCCCGCUCUCAACAGUGAGGAUAAGUAGGGGGCGUGGCAC ..((((((.....-------...---------))))))(((((...(((....)-))...(((((((((((((....))))....))).))))))))))).. ( -35.00) >DroEre_CAF1 28620 100 - 1 AUUCCGGACUCGGGGCUCGGGACUCCGGACUCACUGGAGUCACUGGGCUU-UUU-GUUACGCCCCCGCUCUCAGCGGAAAGCGUAGGCAGGGGGCGUGGCAC ...(((....)))(((((((((((((((.....)))))))).))))))).-..(-((((((((((((((..(.((.....)))..))).)))))))))))). ( -55.70) >DroYak_CAF1 26360 92 - 1 AUACCGGACUCCGGUCUCCGGACUCCGG---------AGUCACUGGGCUUUUUU-GUUACGCCCAGGCUCUCAACGGUAAGGAUAAGUAGGGGGCGUGGCAC ...(((((.(((((...))))).)))))---------.((((((((((......-.....))))).((((((.((...........)).))))))))))).. ( -40.40) >DroPer_CAF1 26659 76 - 1 GAACCGGAG-------------A---------GCCGGAGUCAGUGGGUUUUAUCCGUAA-AC-GAGGC-AUCGAGGG-AGGGGGCCGUGGGGCGCUGGGAAU ...((((..-------------.---------.))))..(((((((((((..(((.(..-.(-((...-.)))).))-)..)))))......)))))).... ( -21.60) >consensus AUUCCGGAAUCCG_______GAC_________ACUGGAGUCACUGGGCAUUUUU_GUAACGCCCCCGCUCUCAACGGUAAGGAUAAGUAGGGGGCGUGGCAC ..(((((..........................)))))(((((.((((............))))..((((((.((...........)).))))))))))).. (-17.02 = -18.05 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:41 2006