Locus 1835

Sequence ID 3R_DroMel_CAF1
Location 5,248,454 – 5,248,567
Length 113
Max. P 0.827677
window3017

overview

Window 7

Location 5,248,454 – 5,248,567
Length 113
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.42
Mean single sequence MFE -32.29
Consensus MFE -26.14
Energy contribution -27.02
Covariance contribution 0.88
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.81
SVM decision value 0.70
SVM RNA-class probability 0.827677
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5248454 113 - 27905053
UA------UCUGGGUAACAUAAGUGGCUAGGUAAAUAAAUAACAACUUGGUACGCGACCGCCUAGAUACUACGCAUCCCUGGCGACGACAACAUGGUUUCGCUUGAGGAAUGCACAUCG
((------(((((((.......((((((((((............))))))).)))....)))))))))....((((.((((((((.(((......))))))))..))).))))...... ( -33.70)
>DroSec_CAF1 22320 113 - 1
UA------UCUGGGUAACAUAAGCGCAUAGGUAAAUAAAUAACAACUUGGUACGCGACCGCCUAGAUACUACGCAUCCCUGGCGACGACAACACGGUUUCGCUUGAGGAAUGCACAUCG
((------(((((((.......(((..(((((............)))))...)))....)))))))))....((((.((((((((.(((......))))))))..))).))))...... ( -31.40)
>DroSim_CAF1 22458 113 - 1
UA------UCUGGGUAACAUAAGUGCCUAGGUAAAUAAAUAACAACUUGGUACGCGACCGCCUAGAUACUACGCAUCCCUGGCGACGACAACACGGUUUCGCUUGAGGAAUGCACAUCG
((------(((((((.......(((((.((((............)))))))))......)))))))))....((((.((((((((.(((......))))))))..))).))))...... ( -34.62)
>DroEre_CAF1 24815 113 - 1
UA------UCUGGCUAACAAAAGUGCCUAGGUAAAUAAAUAACAACUUGGUACGAGUCCACCUAGAUACAACGCAUCCCUGGCGACGACAACACGGUUUCGCUUGAGGAAUGCACAUCG
((------(((((.........(((((.((((............)))))))))........)))))))....((((.((((((((.(((......))))))))..))).))))...... ( -29.23)
>DroYak_CAF1 22505 119 - 1
UAAGCAAAGUAGGGUAGCAAAAGUGCCUAGGUGAAUAAAUAACAACUUGGUACAAAGCCGCCUAGAUACUACGCAUCCCUGGCGACGACAACACGGUUUCGCUUGAGGAAUGCACAUCG
.......(((((((..((....(((((.((((............)))))))))...))..)))...))))..((((.((((((((.(((......))))))))..))).))))...... ( -32.50)
>consensus
UA______UCUGGGUAACAUAAGUGCCUAGGUAAAUAAAUAACAACUUGGUACGCGACCGCCUAGAUACUACGCAUCCCUGGCGACGACAACACGGUUUCGCUUGAGGAAUGCACAUCG
........(((((((.......(((((.((((............)))))))))......)))))))......((((.((((((((.(((......))))))))..))).))))...... (-26.14 = -27.02 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:39 2006