Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,247,910 – 5,248,007 |
Length | 97 |
Max. P | 0.613981 |
Location | 5,247,910 – 5,248,007 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -20.78 |
Consensus MFE | -13.12 |
Energy contribution | -12.92 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.38 |
Mean z-score | -1.79 |
Structure conservation index | 0.63 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5247910 97 + 27905053 GACUAGGCAGUAAUUGCCGUCUCAGUUAAUUGGCUACAUCAAUUGAAAGCCAUUGGAGGUAAGCUCGCAGUAAGAAAAA---AAUAAAUGAAAACAACAA (((..(((((...))))))))(((.(((...((((...((....)).))))(((((((.....))).))))........---..))).)))......... ( -17.00) >DroSec_CAF1 21783 100 + 1 GACUAGGCGGUAAUUGCCGUCUCAGUUAAUUGGCUGCAUCAAUUGAAAGCCAUUGGAGGUAAGCCCGCAGUAAAAAAAAAGAAAGAAAUGAAAACAACGA (((((((((((....))))))).)))).....(((((.(((((.(....).))))).((....)).)))))............................. ( -22.30) >DroSim_CAF1 21923 96 + 1 GACUAGGCGGUAAUUGCCGUCUCAGUUAAUUGGCUGCAUCAAUUGAAAGCCAUUGGAGGUAAGCUCGCAGUAAAAAAAAA----GAAAUGAAAACAACAA (((((((((((....))))))).))))....((((...((....)).))))(((((((.....))).)))).........----................ ( -23.00) >DroYak_CAF1 21952 89 + 1 GACUAGGCGGUAAUUGCCGCCUCAAUUAAUUGGCUGCAUCAAUUGAAAGCCAUUGGAGGUGAGCCCGCAGUAUAAAA----------AUG-AAACAACAA ......((((.....((((((((.......(((((...((....)).)))))...)))))).)))))).........----------...-......... ( -24.50) >DroAna_CAF1 20844 94 + 1 U----GUUUGUAAUUGCAGUCACAGUUAAUUGGCUGCAUCAAUUGAAUGUUAUUAGAGGUAACGCCGCAACAAAAAACAA--AAACAAUAAAAGCAAAAA .----.(((((...((((((((........))))))))....(((..((((((.....))))))...)))..........--...........))))).. ( -17.10) >consensus GACUAGGCGGUAAUUGCCGUCUCAGUUAAUUGGCUGCAUCAAUUGAAAGCCAUUGGAGGUAAGCCCGCAGUAAAAAAAAA__AAGAAAUGAAAACAACAA .....((((((....))))))...........(((((.((....))..(((......)))......)))))............................. (-13.12 = -12.92 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:38 2006