Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,237,995 – 5,238,113 |
Length | 118 |
Max. P | 0.633561 |
Location | 5,237,995 – 5,238,113 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.40 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -15.39 |
Energy contribution | -18.47 |
Covariance contribution | 3.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.57 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5237995 118 - 27905053 AUCGUGACAUUACAGCUUUUUAGCUGU--ACAGAGUUAACAGAUACCGCCAAGUGGCAACGCCAUCAAAUUCUGUUGCUUCUGUUGUGAUAAACUAACGGUAAAAUCACAAUCCUUUAUU ..........(((((((....))))))--)(((((.(((((((.........(((....)))........))))))).)))))(((((((...(....).....)))))))......... ( -31.53) >DroSec_CAF1 11763 119 - 1 AU-UUGGCAUUACAGCGCAUAAGCUGUUAAAAAAGUUAACAGAUACCUCCAAGUGGCAACGCCAUCCAACUCUGUUGAUUCUGUUGUGAUAAACUAACGGUAAAAUCACAAUCUUGUAUU ..-...(((..(((((......)))))......((((((((((.........(((....)))........))))))))))..((((((((...(....).....))))))))..)))... ( -26.63) >DroSim_CAF1 11827 120 - 1 AUCUUGGUAUUACAGCGCAUAAGCUGUUAACAAAGUUAACAGAUACCUCCAAGUGGCAACGCCAUCCAACUCUGUUGCUUCUGUUGUGAUAAACUAACGGUAAAAACACAUUCUUGUAUA ((((((((((((((((.......((((((((...)))))))).........((.(((((((...........))))))).))))))))))..))))).)))......(((....)))... ( -26.50) >DroEre_CAF1 14034 118 - 1 AUCAUGGCAUUAUAGCAUUAAAGCUGUUAACAGAGCUAACAGUUACCGCCAAGUGGCAACUCCAUCGAACUCUGUUGCGUUUGUUGUGAGGAACUAACGGUAAUAUCACAAUC-UU-UUU ....((((...(((((......))))).......))))...(((((((((....)))..(((((.(((((.(....).))))).)).)))........)))))).........-..-... ( -27.60) >DroYak_CAF1 11817 105 - 1 AUCUUGGUAAUAUAGCAUUUAAGCUGUUAACAGAAUUA-------------AGUGGCAACGCCAUUAAACUCUGUUGC-UUCGUUGUGAUGAACUAACGGUAAUAUCUCAAUCCCU-UUU .....((....(((((......)))))(((((((.((.-------------((((((...)))))).)).))))))).-...((((.((((..(....)....)))).)))).)).-... ( -22.00) >consensus AUCUUGGCAUUACAGCAUUUAAGCUGUUAACAGAGUUAACAGAUACCGCCAAGUGGCAACGCCAUCAAACUCUGUUGCUUCUGUUGUGAUAAACUAACGGUAAAAUCACAAUCCUUUAUU ...........(((((......))))).(((((((.(((((((.........(((....)))........))))))).)))))))(((((...(....).....)))))........... (-15.39 = -18.47 + 3.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:34 2006