Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,234,225 – 5,234,320 |
Length | 95 |
Max. P | 0.916329 |
Location | 5,234,225 – 5,234,320 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -17.14 |
Energy contribution | -20.30 |
Covariance contribution | 3.16 |
Combinations/Pair | 1.16 |
Mean z-score | -2.42 |
Structure conservation index | 0.59 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.916329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5234225 95 + 27905053 GAAUCCAUAUAGGAAAUAUGUACAACCGACGGGCCUCGAAGCACAAUAUGCUAAGGCCCAAAGAUCCAAUGUGUUGUGCCUUCCUAAUGGGUUCC ((((((((.((((((....(((((((((..((((((...((((.....)))).))))))...(...)..)).))))))).)))))))))))))). ( -36.00) >DroSec_CAF1 7987 95 + 1 GAUUCCAAAUAGGAAAUAUGUACAAUCGACGGGCCUCGAAGCACAAUAUGCUGAGGCCCAAGGAUCCAGUGUAUUGUUCCUUCCUCAAGGGUUCC ((..((....(((((....(((((......(((((((..((((.....)))))))))))..(....)..)))))..))))).......))..)). ( -29.10) >DroSim_CAF1 8047 95 + 1 GAUUCCUAAUAGGAAAUAUGUACAAUCGACGGGCCUCGAAGCACAAUAUGCUGAGGCCCAGAGAUCCAGUGUAAUGUUCCUUCCUCAUGGGUUCC ((..((((..(((((((((.(((((((...(((((((..((((.....)))))))))))...)))....))))))))...)))))..)))).)). ( -29.80) >DroEre_CAF1 10233 92 + 1 AAAUCCAAAUAGGAAAUAUGUACUACCGACGGGACUCGAAGGCCAG--UGCUGAGACCCGUAGAACCAGUGCAUUGUGC-UCCUUAAUGUGUUUC (((..((...((((.(((((((((....(((((.(((...(((...--.)))))).)))))......)))))).)))..-))))...))..))). ( -24.70) >DroYak_CAF1 7996 92 + 1 AAAUCCAAAUAGGAAAUAUGUACAAUCGACGGGCCUUGAGGGACAU--UGUUCAGGCCCAAAGAUCCAGUCUAUUGUGC-UCCUUAAUCGGUUCU .((((.....((((.....(((((((.(((((((((.(((.(....--).)))))))))...(...).))).)))))))-)))).....)))).. ( -25.10) >consensus GAAUCCAAAUAGGAAAUAUGUACAAUCGACGGGCCUCGAAGCACAAUAUGCUGAGGCCCAAAGAUCCAGUGUAUUGUGCCUUCCUAAUGGGUUCC ((((((...((((((....(((((((..(((((((((..((((.....))))))))))).........))..))))))).))))))..)))))). (-17.14 = -20.30 + 3.16)
Location | 5,234,225 – 5,234,320 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -18.18 |
Energy contribution | -20.22 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.75 |
Structure conservation index | 0.65 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5234225 95 - 27905053 GGAACCCAUUAGGAAGGCACAACACAUUGGAUCUUUGGGCCUUAGCAUAUUGUGCUUCGAGGCCCGUCGGUUGUACAUAUUUCCUAUAUGGAUUC .(((.(((((((((((...(((....)))((((..(((((((((((((...)))))..))))))))..)))).......))))))).)))).))) ( -32.60) >DroSec_CAF1 7987 95 - 1 GGAACCCUUGAGGAAGGAACAAUACACUGGAUCCUUGGGCCUCAGCAUAUUGUGCUUCGAGGCCCGUCGAUUGUACAUAUUUCCUAUUUGGAAUC .....((...((((((......((((....(((..(((((((((((((...)))))..))))))))..)))))))....))))))....)).... ( -30.70) >DroSim_CAF1 8047 95 - 1 GGAACCCAUGAGGAAGGAACAUUACACUGGAUCUCUGGGCCUCAGCAUAUUGUGCUUCGAGGCCCGUCGAUUGUACAUAUUUCCUAUUAGGAAUC ....((....((((((......((((.(.(((....((((((((((((...)))))..)))))))))).).))))....))))))....)).... ( -30.40) >DroEre_CAF1 10233 92 - 1 GAAACACAUUAAGGA-GCACAAUGCACUGGUUCUACGGGUCUCAGCA--CUGGCCUUCGAGUCCCGUCGGUAGUACAUAUUUCCUAUUUGGAUUU ......((...((((-(....(((.((((..((.(((((.(((.((.--...))....))).))))).)))))).)))..)))))...))..... ( -21.50) >DroYak_CAF1 7996 92 - 1 AGAACCGAUUAAGGA-GCACAAUAGACUGGAUCUUUGGGCCUGAACA--AUGUCCCUCAAGGCCCGUCGAUUGUACAUAUUUCCUAUUUGGAUUU ....((((...((((-....((((.....((((..(((((((((...--.......)).)))))))..)))).....))))))))..)))).... ( -23.60) >consensus GGAACCCAUUAGGAAGGCACAAUACACUGGAUCUUUGGGCCUCAGCAUAUUGUGCUUCGAGGCCCGUCGAUUGUACAUAUUUCCUAUUUGGAUUC ....((...((((((....((......))((((..((((((((((((.....))))..))))))))..))))........))))))...)).... (-18.18 = -20.22 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:31 2006