Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,226,200 – 5,226,293 |
Length | 93 |
Max. P | 0.971487 |
Location | 5,226,200 – 5,226,293 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -37.87 |
Consensus MFE | -35.70 |
Energy contribution | -36.03 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.97 |
Structure conservation index | 0.94 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817195 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5226200 93 + 27905053 CUUGCCAGCGGCUCCCUUGGCGCCAGCACCACCCUUGGUGACCUUGCCGGCACCGGCCUUGGUUCCCUUGGCUCCAGCAGCGGGCUUCUUCUU ...(((.((.(((.....((.((((((((((....)))))(((..((((....))))...)))....))))).))))).)).)))........ ( -35.60) >DroEre_CAF1 37 93 + 1 CUUGCCAGCGGCUCCCUUGGCGCCAGCACCACCCUUGGUGACCUUGCCGGCACCGGCCUUGGUACCCUUGGCACCAGCGGCGGGCUUCUUCUU ......((.(((((((((((.((((((((((....)))))(((..((((....))))...)))....))))).)))).)).))))).)).... ( -38.90) >DroYak_CAF1 38 93 + 1 CUUGCCAGCGGCUCCCUUGGCGCCAGGACCACCCUUGGUGACCUUGCCGGCACCGGCCUUGGUACCCUUGGCACCAGCGGCAGGCUUCUUCUU ((((((.((((...)).(((.((((((..((((...))))(((..((((....))))...)))...)))))).)))))))))))......... ( -39.10) >consensus CUUGCCAGCGGCUCCCUUGGCGCCAGCACCACCCUUGGUGACCUUGCCGGCACCGGCCUUGGUACCCUUGGCACCAGCGGCGGGCUUCUUCUU ...(((.((.(((.....((.((((((((((....)))))(((..((((....))))...)))....))))).))))).)).)))........ (-35.70 = -36.03 + 0.33)
Location | 5,226,200 – 5,226,293 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -45.00 |
Consensus MFE | -41.41 |
Energy contribution | -41.97 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -3.10 |
Structure conservation index | 0.92 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5226200 93 - 27905053 AAGAAGAAGCCCGCUGCUGGAGCCAAGGGAACCAAGGCCGGUGCCGGCAAGGUCACCAAGGGUGGUGCUGGCGCCAAGGGAGCCGCUGGCAAG ........(((.((.(((.(.(((..((...))..))))((((((((((...(((((...))))))))))))))).....))).)).)))... ( -41.00) >DroEre_CAF1 37 93 - 1 AAGAAGAAGCCCGCCGCUGGUGCCAAGGGUACCAAGGCCGGUGCCGGCAAGGUCACCAAGGGUGGUGCUGGCGCCAAGGGAGCCGCUGGCAAG .........((((((..(((((((...))))))).))).((((((((((...(((((...)))))))))))))))..))).(((...)))... ( -47.30) >DroYak_CAF1 38 93 - 1 AAGAAGAAGCCUGCCGCUGGUGCCAAGGGUACCAAGGCCGGUGCCGGCAAGGUCACCAAGGGUGGUCCUGGCGCCAAGGGAGCCGCUGGCAAG ........(((.(((..(((((((...))))))).))).)))((((((.((((((((...))))).)))(((.((...)).)))))))))... ( -46.70) >consensus AAGAAGAAGCCCGCCGCUGGUGCCAAGGGUACCAAGGCCGGUGCCGGCAAGGUCACCAAGGGUGGUGCUGGCGCCAAGGGAGCCGCUGGCAAG .........((((((..(((((((...))))))).))).((((((((((...(((((...)))))))))))))))..))).(((...)))... (-41.41 = -41.97 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:28 2006