Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,222,721 – 5,222,834 |
Length | 113 |
Max. P | 0.986361 |
Location | 5,222,721 – 5,222,834 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 73.20 |
Mean single sequence MFE | -29.79 |
Consensus MFE | -17.54 |
Energy contribution | -19.60 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.21 |
Mean z-score | -2.22 |
Structure conservation index | 0.59 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5222721 113 + 27905053 -AAAUGUAUCUGGUAUCUUUCAGAUGCAUUAAGUAUCUGAGGAUGCUUUGUCCAUUGAAUCUCUAUGAGGAUCAGCAUCCGUUGGCUAUGUAAAGUACCCUAUGAAGUGUUAUC -.((..(.((.(((((...((((((((.....))))))))(((((((..((((...............)))).)))))))..............)))))....)).)..))... ( -29.36) >DroSim_CAF1 11443 102 + 1 -AAAAGUAUCUGGUAUCUAACAGAUGCACCAAGUAUCUGAGGAUGCUUUU-CCA----------AUGCGGCUCAGCAUCCGUUGGCUAUGUAAGUUACUUUAUGAAGUGUUAUA -.((((((.((.(((.(((((((((((.....))))))..(((((((...-((.----------....))...)))))))))))).)))...)).))))))............. ( -29.50) >DroEre_CAF1 12244 112 + 1 UAUGAGUAUCUUGUAUCUAACAGAUACACU-CGUAUCUGGGGAUGCUUUU-UCCAUAAAUCUCUAUGAGGAUCAGCAUCAGUUGGUCAUGUACGAUACUUUAUGAAAUGCCCUG ...(((((((..((((((..(((((((...-.))))))).))))))....-..((((......))))..(((((((....)))))))......))))))).............. ( -30.70) >DroYak_CAF1 6465 110 + 1 UUGUAGUAUC-UGUAUCCAACAGAUACACU-UGUAUCUUGGGCUGCUU-U-UCAAUGAAUCUCUAUGGGGAUCAGCAUCAGUUGCUUAUGCAAGGUAGUUUUUGAAAUGUUCUG .....(((((-(((.....))))))))...-....((..(((((((((-(-.((.(((.((((....)))))))(((.....)))...)).))))))))))..))......... ( -29.60) >consensus _AAAAGUAUCUGGUAUCUAACAGAUACACU_AGUAUCUGAGGAUGCUUUU_CCAAUGAAUCUCUAUGAGGAUCAGCAUCAGUUGGCUAUGUAAGGUACUUUAUGAAAUGUUAUG ..((((((((..((((((..(((((((.....))))))).)))))).......................(((((((....)))))))......))))))))............. (-17.54 = -19.60 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:27 2006