Locus 1824

Sequence ID 3R_DroMel_CAF1
Location 5,222,215 – 5,222,306
Length 91
Max. P 0.635211
window3000

overview

Window 0

Location 5,222,215 – 5,222,306
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 86.05
Mean single sequence MFE -21.33
Consensus MFE -16.83
Energy contribution -16.97
Covariance contribution 0.14
Combinations/Pair 1.10
Mean z-score -2.09
Structure conservation index 0.79
SVM decision value 0.21
SVM RNA-class probability 0.635211
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5222215 91 - 27905053
AGAUUUAUAUUUAUGUGAGGCAACUAUGCGUCACAAUAGACCCAGUCUGCUUAAAUUAGAAUCAGAUAUUUAGGCCGCCUCACUACUUAUA
.....((((..((.(((((((.....((.(((......))).))....((((((((...........)))))))).)))))))))..)))) ( -22.70)
>DroSec_CAF1 5602 91 - 1
AGAUUUAUACUUAUGUGAGGCAACUAUGCGUCACAAUGGACCCAGUCUGCUUAAAUUAGAAUCAGAUAUUUAGGCCGCCUCACUACUUAUA
..............(((((((.....((.(((......))).))....((((((((...........)))))))).)))))))........ ( -22.20)
>DroSim_CAF1 10937 91 - 1
AGAUUUAUACUUAUGUGAGGCAACUAUGCGUCACAAUGGACCCAGUCUGCUUAAAUUAGAAUCAGAUAUUUAGGCCGCCUCACUACUUAUA
..............(((((((.....((.(((......))).))....((((((((...........)))))))).)))))))........ ( -22.20)
>DroEre_CAF1 11721 85 - 1
AGAUUU------AUGUGAGGCAACUAUGCGUCACAUUAGACCCAGUCUGCUCAAAUUAGAAUCAGAUAUUUGGGCAGCCACUCUUCUUAUA
......------((((((.(((....))).)))))).(((...(((((((((((((...........))))))))))..)))..))).... ( -22.90)
>DroYak_CAF1 5999 85 - 1
AGAUUU------AUGUGAGGCAACUAUGCGUCACAAUGGACCCAGUUCGCUGAAAUUAGAAUCAGAUAUUUAGGCCACCACUCUACUUAUA
(((...------.(((((.(((....))).))))).(((.((.((....((((........))))....)).)))))....)))....... ( -19.10)
>DroAna_CAF1 5750 89 - 1
AGAUUUAUG--UAUGUGAGGCAAGCAUGCGUCACAAUUCAGAAUGUCUGCUUAAAUUAGAUGCAAAUAUUUAGGCCGUCUUGCUACUUAUA
((((...((--..(((((.(((....))).)))))...))....))))((((((((...........))))))))................ ( -18.90)
>consensus
AGAUUUAUA__UAUGUGAGGCAACUAUGCGUCACAAUGGACCCAGUCUGCUUAAAUUAGAAUCAGAUAUUUAGGCCGCCUCACUACUUAUA
(((((........(((((.(((....))).)))))........)))))((((((((...........))))))))................ (-16.83 = -16.97 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:23 2006