| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,212,180 – 5,212,274 |
| Length | 94 |
| Max. P | 0.703728 |
| Location | 5,212,180 – 5,212,274 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 86.64 |
| Mean single sequence MFE | -22.60 |
| Consensus MFE | -18.10 |
| Energy contribution | -19.10 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5212180 94 - 27905053 ---------CUCCAACAUCUAAACUCCAACUUGCAACUCCCAGCCGAUACAUUUGGGCCAACAAUCAUGU-UUGGGGGUUGCUAGCAUAAUUGCCACAUAAUGG ---------................(((....(((((((((((((.(......).))).((((....)))-)))))))))))..(((....))).......))) ( -25.70) >DroSec_CAF1 18043 99 - 1 ----CCAACCUCCAACAUCCAAACUCCAACUUGCAACUCCCAGCCGAUACAUUUGGGCCAACAAUCAUGU-UUGGGGGUAGCUAGCAUAAUUGCCACAUAAUGG ----.....................(((....((.((((((((((.(......).))).((((....)))-)))))))).))..(((....))).......))) ( -21.60) >DroYak_CAF1 19236 104 - 1 AACUCCAAACUCCAAACUCCAACCUCCAACUUGCAACUCGCAGUCGAUACAUUUAGCACAACAAUCAUGUUUUGGGGGUUGCUAGCAUAAUUGCCACAUAAUGG ...........(((.....((((((((((..(((.....)))((..(.....)..))..............))))))))))...(((....))).......))) ( -20.50) >consensus ____CCAA_CUCCAACAUCCAAACUCCAACUUGCAACUCCCAGCCGAUACAUUUGGGCCAACAAUCAUGU_UUGGGGGUUGCUAGCAUAAUUGCCACAUAAUGG .........................(((....(((((((((((.....(((((((......)))..)))).)))))))))))..(((....))).......))) (-18.10 = -19.10 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:19 2006