Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,199,799 – 5,199,893 |
Length | 94 |
Max. P | 0.889247 |
Location | 5,199,799 – 5,199,893 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 93.88 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -17.28 |
Energy contribution | -18.28 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.78 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5199799 94 + 27905053 GCGAGU-AAUCGCAUAAUGGAACCCACUUGGUUGCC-CCAACUCGAUGAAUCCACCGACACCUAUCUGCUCCAUUGAGUAUCUCUCACACUUUCUU ((((..-..))))..((((((......((((.....-)))).(((.((....)).)))...........))))))(((.....))).......... ( -18.60) >DroSec_CAF1 5802 94 + 1 GCGAGU-AAUCGCAUAAUGGAGCCCACUCGGCUGCC-CCAACUCGAUGAAUCCACCGACACCUAUCUGCUCCAUUGAGUAUCUCUCACACUUUCUU ((((..-..))))..((((((((......((.....-))...(((.((....)).))).........))))))))(((.....))).......... ( -23.10) >DroSim_CAF1 6711 94 + 1 GCGAGU-CAUCGCAUAAUGGAGCCCACUCGGCUGCC-CCAACUCGAUGAAUCCACCGACACCUAUCUGCUCCAUUGAGUAUCUCUCACACUUUCUU ((((..-..))))..((((((((......((.....-))...(((.((....)).))).........))))))))(((.....))).......... ( -21.60) >DroEre_CAF1 5779 94 + 1 GCGAGU-AAUCGCAUAAUGGUGCCCACUCGGGCGUC-CCAACUCGAUGAAUCCACCGACACCUAUCUGCUCCAUUGAGUAUCUCUCACACUUUCUU ((((..-..)))).....(((((((....))))).)-)..((((((((.......................))))))))................. ( -24.20) >DroYak_CAF1 6748 96 + 1 GCGAGUUAAUCGCAUAAUGGUAACCACUCGGGCGCCCCCAACUCGAUGGAUUCACCGACACCUAUCUGCUCCAUUGAGUAUCUCUCACACUUUCUU ((((.....)))).....(((..((....))..)))....((((((((((...................))))))))))................. ( -23.01) >consensus GCGAGU_AAUCGCAUAAUGGAGCCCACUCGGCUGCC_CCAACUCGAUGAAUCCACCGACACCUAUCUGCUCCAUUGAGUAUCUCUCACACUUUCUU ((((.....))))..((((((((......((......))...(((.((....)).))).........))))))))(((.....))).......... (-17.28 = -18.28 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:18 2006