Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 842,939 – 843,038 |
Length | 99 |
Max. P | 0.996139 |
Location | 842,939 – 843,038 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.50 |
Mean single sequence MFE | -26.15 |
Consensus MFE | -24.10 |
Energy contribution | -24.35 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.79 |
Structure conservation index | 0.92 |
SVM decision value | 2.66 |
SVM RNA-class probability | 0.996139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 842939 99 + 27905053 UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA---------------------UUCGUCCACACAAUAAAAUCCAAACA ................((((...(((((.((((....(((((....)))))(((((....)))))........---------------------...)))).)))))......))))... ( -25.30) >DroSec_CAF1 18708 99 + 1 UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA---------------------UUCGUCCACACAAUAAAAUCCAAACA ................((((...(((((.((((....(((((....)))))(((((....)))))........---------------------...)))).)))))......))))... ( -25.30) >DroSim_CAF1 17918 99 + 1 UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA---------------------UUCGUCCACACAAUAAAAUCCAAACA ................((((...(((((.((((....(((((....)))))(((((....)))))........---------------------...)))).)))))......))))... ( -25.30) >DroEre_CAF1 19647 120 + 1 UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGGGCACUCAUGUAUGGCAUACAUGUGCCCAUUCCCAUUCCCCAUUCCCCAUCGUCCAUUCGUCCACACAAUAAAAUCCAAACA ................((((...(((((.((((....((((((..((((((...)))))))))))).......................(......))))).)))))......))))... ( -28.70) >consensus UCUGCUUUAAAUUGAAUUGGCCUUUGUGCGGACACUCGUGCACUCGUGUAUGGCAUACAUGUGCCCAUUCCCA_____________________UUCGUCCACACAAUAAAAUCCAAACA ................((((...(((((.((((....(((((....)))))(((((....)))))................................)))).)))))......))))... (-24.10 = -24.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:20 2006