Locus 1817

Sequence ID 3R_DroMel_CAF1
Location 5,193,440 – 5,193,557
Length 117
Max. P 0.869081
window2991

overview

Window 1

Location 5,193,440 – 5,193,557
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.52
Mean single sequence MFE -19.03
Consensus MFE -17.73
Energy contribution -17.73
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.14
Structure conservation index 0.93
SVM decision value 0.86
SVM RNA-class probability 0.869081
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5193440 117 + 27905053
GAAGUAGAAAUGUAAAUUAGGUGUAAAUAAAUAUACAUAGAAUACAAAGUCUAGAAACAAAUUGACAAACGUAGGGAUUGCAUAAUAUACA---AAUUAUGAAUCACUGCCUAAAAACUA
....((((..((((..(((.(((((......))))).)))..))))...)))).................((((.((((.((((((.....---.)))))))))).)))).......... ( -19.00)
>DroSim_CAF1 363 117 + 1
GAAGUAGAAAUGUAAAUUAGGUGUAAAUAAAUGUACAUAGAAUACAAAGUCUAGAAACAAAUUGACAAACGUAGGGAUUGCAUAAUGUACA---AAUUAUGAAUCACUGCCUAAAAACUA
....((((..((((..((..(((((........)))))..))))))...)))).................((((.((((.((((((.....---.)))))))))).)))).......... ( -19.20)
>DroYak_CAF1 378 120 + 1
GAAGUAGAAAUGUAAAUUAGGUGUAAAUAAAUAUACAUAGAAUACAAAGUCUAGAAAGAAAUUGACAAACGUAGGGAUUGCAUAAUAUACAAAAAAUUAUGAAUCACUGCUUAGAAACUA
.((((((..((((..(((..(((((........)))))..))).(((..(((....)))..)))....))))...((((.((((((.........)))))))))).))))))........ ( -18.90)
>consensus
GAAGUAGAAAUGUAAAUUAGGUGUAAAUAAAUAUACAUAGAAUACAAAGUCUAGAAACAAAUUGACAAACGUAGGGAUUGCAUAAUAUACA___AAUUAUGAAUCACUGCCUAAAAACUA
....((((..((((..((..(((((........)))))..))))))...)))).................((((.((((.((((((.........)))))))))).)))).......... (-17.73 = -17.73 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:15 2006