Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,191,465 – 5,191,560 |
Length | 95 |
Max. P | 0.712923 |
Location | 5,191,465 – 5,191,560 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 81.47 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -18.11 |
Energy contribution | -16.62 |
Covariance contribution | -1.49 |
Combinations/Pair | 1.46 |
Mean z-score | -1.57 |
Structure conservation index | 0.75 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5191465 95 + 27905053 AUUGACUUACAGAAAUCCACAUCAUCGGAUCUAUAUGGCAUGGAGUUAUAUCUGAAAAAGGAUUUCCUACAAUAUACAGGCAGGUAAGUUAUCAA--------------- ..((((((((.(((((((......(((((....((((((.....)))))))))))....)))))))((.(........)..))))))))))....--------------- ( -20.40) >DroSec_CAF1 286 95 + 1 AUUGACCUACAGAAAUCCACAUCAUCGGACCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUGCAAUAUACAGGCAGGUAAGUUAUCGU--------------- ..((((.(((.(((((((......(((((....((..((.....))..)))))))....)))))))((((.........))))))).))))....--------------- ( -22.20) >DroEre_CAF1 284 95 + 1 AGUGACUUGCAGAAAUCCACAUCGUCGGAGCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUGCAAUAUACAGGCAGGUAAGUCAUCAG--------------- .(((((((((.(((((((......(((((....((..((.....))..)))))))....)))))))((((.........)))))))))))))...--------------- ( -30.60) >DroYak_CAF1 284 95 + 1 AUUGAUUUACAGAAAUCCACUUCAUCGGAGCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUGCAAUAUACAGGCAGGUGAGUUAUUAA--------------- ..((((((((.(((((((......(((((....((..((.....))..)))))))....)))))))((((.........))))))))))))....--------------- ( -24.10) >DroMoj_CAF1 298 95 + 1 AGUCAUUUGCAGAGGUCCACAUCGUCAGAGACAUAUGGGAUGGAAUUGUAUUUCAAAAAGGACUUUCUACAAUACACAGGCAGGUGAGUGAUCGU--------------- (.((((((((.(((((((.((((.(((........)))))))(((......))).....)))))))...(........))))))))).)......--------------- ( -22.50) >DroPer_CAF1 311 110 + 1 AGUGGCUUGCAGAAAUCCACUUCUUCGGAUCUAUAUGGCAUGGAGCUUUAUUUGAAAAAGGAUUUCCUACAAUAUACAGGCAGGUGAGUGAUCGGGGAAAUCCUACAAAA (((((.((.....)).)))))((....))((.(((.(((.....))).)))..))...((((((((((...((.(((......))).)).....))))))))))...... ( -25.30) >consensus AGUGACUUACAGAAAUCCACAUCAUCGGAGCUAUAUGGCAUGGAGUUGUAUCUGAAAAAGGAUUUCCUACAAUAUACAGGCAGGUAAGUUAUCAA_______________ ..((((((((.(((((((......(((((....((((((.....)))))))))))....)))))))((.........))....))))))))................... (-18.11 = -16.62 + -1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:12 2006