Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,179,351 – 5,179,450 |
Length | 99 |
Max. P | 0.968294 |
Location | 5,179,351 – 5,179,450 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -21.66 |
Energy contribution | -21.86 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.90 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5179351 99 - 27905053 UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGAGAUACACUGAAC ..((((((((...(((((....)))))((((......))))....................))))))))..((((.....))))............... ( -22.60) >DroSec_CAF1 17935 99 - 1 UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUGUGGGCGAAAUCCGAGACCUACACUGAAC ..((((((((...(((((....)))))((((......))))....................))))))))(((((((.........).))))))...... ( -27.60) >DroSim_CAF1 18247 99 - 1 UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGACCUACACUGAAC ..((((((((...(((((....)))))((((......))))....................))))))))...((.((.....))...)).......... ( -23.60) >DroEre_CAF1 17741 99 - 1 UUACUUUCUCAAAGUCGAAAAGUCGACGUGCUGAGCUGCACAUCCAUCACAAACGAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGACAUACACUGAAC ..((((((((...(((((....)))))((((......))))....................))))))))((((..((.....))...))))........ ( -25.40) >DroYak_CAF1 18174 99 - 1 UUACUUUCUCAAAGUCAAAAAGUCGACGUGCCGAGCUGCACAUCCAUCACAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGCUAUACACUGAAC ..((((((((...(((........)))((((......))))....................))))))))(((((.((.....))..)))))........ ( -20.90) >consensus UUACUUUCUCAAAGUCGAAAAGUCGACGUGCCGAGCUGCACAUCCAUCAAAAACAAAGUAAGAGAGAGUUAUGGGCGAAAUCCGAGACAUACACUGAAC ..((((((((...(((((....)))))((((......))))....................))))))))..((((.....))))............... (-21.66 = -21.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:11 2006