Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,170,796 – 5,170,962 |
Length | 166 |
Max. P | 0.949033 |
Location | 5,170,796 – 5,170,902 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.09 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -24.50 |
Energy contribution | -24.94 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.21 |
Structure conservation index | 0.94 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5170796 106 + 27905053 AAUUUAAUGACCGCAGCUGUUUCUUUUGGGGACAGACUGUACUGCUUCGAUUUCGAUCUUGAUUAAAUCCCAUUGAAAAUAGGCAUUUAGAAUGCACAUAUAUCGG ..(((((((...((((((((..(.....)..)))).))))......(((....)))..............))))))).....((((.....))))........... ( -22.20) >DroSec_CAF1 9332 105 + 1 AAUGCAAUGACCGCAGCUGUUUCUUUUGGGGACAGACUGUACUGCUUCGAU-UCGAUCUUGAUUAAAUCCCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGG ...(((......((((((((..(.....)..)))).))))..)))..((((-.........((((((((((((.....))))).)))))))..........)))). ( -26.71) >DroSim_CAF1 9337 106 + 1 AAUGCAAUGACCGCAGCUGUUUCUUUUGGGGACAGACUGUACUGCUUCGAUUUCGAUCUUGAUUAAAUCCCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGG ..((((......((((((((..(.....)..)))).))))......(((....))).....((((((((((((.....))))).))))))).)))).......... ( -27.90) >DroEre_CAF1 9136 106 + 1 AAUUUAAUGACCGCAGCUGUUUGUUUUGGGGACAGACUGUACUGCUUCGAUUUCGAUCUUGAUUAAAUCCCAUUGUAAAUGGGCAUUUAGUAUGCACAUAUAUCGG ............((((..(((((((.....)))))))....))))..((((..........((((((((((((.....))))).)))))))..........)))). ( -25.25) >DroYak_CAF1 9547 105 + 1 AAAUUCAUGACCGCAGCUGUUUCUUUUGGGAACAGACUGUAC-GCUUCGAGUUCGAUCUUGAUUAAAUCCCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGG ..........(((((((((((((.....))))))).))))..-((..((((......))))((((((((((((.....))))).)))))))..)).........)) ( -28.30) >consensus AAUUUAAUGACCGCAGCUGUUUCUUUUGGGGACAGACUGUACUGCUUCGAUUUCGAUCUUGAUUAAAUCCCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGG ..........(((((((((((((.....))))))).))))...((.(((....))).....((((((((((((.....))))).)))))))..)).........)) (-24.50 = -24.94 + 0.44)
Location | 5,170,865 – 5,170,962 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 96.28 |
Mean single sequence MFE | -23.68 |
Consensus MFE | -21.20 |
Energy contribution | -22.00 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.90 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5170865 97 + 27905053 CCAUUGAAAAUAGGCAUUUAGAAUGCACAUAUAUCGGCUUUUUUUGGGAGCACAAUUACCGCGUCCAAAUGCGGGCAUAGAUUUCAAUGUAAAUUAA .((((((((....((((.....))))...(((..(.((....(((((..((.........))..))))).)).)..)))..))))))))........ ( -23.10) >DroSec_CAF1 9400 97 + 1 CCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGGCUUUUUUUGGGAGCACAAUUACCGCGUCGAAAUGCGGGCAUAGAUUUCAAUGUAAAUUAA .(((((((((((.((((.....)))).)))...((.(((((.....))))).......((((((....)))))).....))))))))))........ ( -24.80) >DroSim_CAF1 9406 97 + 1 CCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGGCUUUUUUUGGGAGCACAAUUACCGCGUCGAAAUGCGGGCAUAGAUUUCAAUGUAAAUUAA .(((((((((((.((((.....)))).)))...((.(((((.....))))).......((((((....)))))).....))))))))))........ ( -24.80) >DroEre_CAF1 9205 96 + 1 CCAUUGUAAAUGGGCAUUUAGUAUGCACAUAUAUCGGGUUU-UUUGGGAGCACAAUUACCGCGUUGAAAUGCGGGCAUAGAUAUCAAUGUAAAUUAA .(((((...(((.((((.....)))).)))(((((..((((-.....)))).......((((((....)))))).....))))))))))........ ( -20.80) >DroYak_CAF1 9615 96 + 1 CCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGGCUUU-UUUGGGAGCACAAUUACCGCGUUGAAAUGCGGGCAUAGAUUUCAAUGUAAAUUAA .(((((((((((.((((.....)))).)))...((.(((((-....))))).......((((((....)))))).....))))))))))........ ( -24.90) >consensus CCAUUGAAAAUGGGCAUUUAGUAUGCACAUAUAUCGGCUUUUUUUGGGAGCACAAUUACCGCGUCGAAAUGCGGGCAUAGAUUUCAAUGUAAAUUAA .(((((((((((.((((.....)))).)))...((.(((((.....))))).......((((((....)))))).....))))))))))........ (-21.20 = -22.00 + 0.80)
Location | 5,170,865 – 5,170,962 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 96.28 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -17.74 |
Energy contribution | -18.18 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.87 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5170865 97 - 27905053 UUAAUUUACAUUGAAAUCUAUGCCCGCAUUUGGACGCGGUAAUUGUGCUCCCAAAAAAAGCCGAUAUAUGUGCAUUCUAAAUGCCUAUUUUCAAUGG ........((((((((.........(((((((((((((...((((.(((.........)))))))...))))...)))))))))....)))))))). ( -22.72) >DroSec_CAF1 9400 97 - 1 UUAAUUUACAUUGAAAUCUAUGCCCGCAUUUCGACGCGGUAAUUGUGCUCCCAAAAAAAGCCGAUAUAUGUGCAUACUAAAUGCCCAUUUUCAAUGG ........((((((((.......((((........))))..((((.(((.........)))))))..(((.((((.....)))).))))))))))). ( -20.50) >DroSim_CAF1 9406 97 - 1 UUAAUUUACAUUGAAAUCUAUGCCCGCAUUUCGACGCGGUAAUUGUGCUCCCAAAAAAAGCCGAUAUAUGUGCAUACUAAAUGCCCAUUUUCAAUGG ........((((((((.......((((........))))..((((.(((.........)))))))..(((.((((.....)))).))))))))))). ( -20.50) >DroEre_CAF1 9205 96 - 1 UUAAUUUACAUUGAUAUCUAUGCCCGCAUUUCAACGCGGUAAUUGUGCUCCCAAA-AAACCCGAUAUAUGUGCAUACUAAAUGCCCAUUUACAAUGG ........((((((((((.....((((........))))...(((......))).-......)))))(((.((((.....)))).)))...))))). ( -17.50) >DroYak_CAF1 9615 96 - 1 UUAAUUUACAUUGAAAUCUAUGCCCGCAUUUCAACGCGGUAAUUGUGCUCCCAAA-AAAGCCGAUAUAUGUGCAUACUAAAUGCCCAUUUUCAAUGG ........((((((((.......((((........))))..((((.(((......-..)))))))..(((.((((.....)))).))))))))))). ( -21.30) >consensus UUAAUUUACAUUGAAAUCUAUGCCCGCAUUUCGACGCGGUAAUUGUGCUCCCAAAAAAAGCCGAUAUAUGUGCAUACUAAAUGCCCAUUUUCAAUGG ........((((((((.......((((........))))..((((.(((.........)))))))..(((.((((.....)))).))))))))))). (-17.74 = -18.18 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:09 2006