Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 842,453 – 842,557 |
Length | 104 |
Max. P | 0.970336 |
Location | 842,453 – 842,557 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.95 |
Mean single sequence MFE | -34.35 |
Consensus MFE | -27.40 |
Energy contribution | -27.65 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -2.61 |
Structure conservation index | 0.80 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 842453 104 + 27905053 UUACUUGGCCGACGAGCAACGCUUACU----------------UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUCGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAAAGUUCU ....(((((((((((..(((((.....----------------.(((((.......)))))..((((((((((..........))))))))))....)))))))))).))))))...... ( -31.70) >DroSec_CAF1 18253 104 + 1 UUACUUGGCCGACGAGCAGCACUAACU----------------UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUGGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAACGUUCU ..((((((((((((((..((((((((.----------------.....)))))).........((((((((((..........))))))))))....))..)))))).)))))).))... ( -31.90) >DroSim_CAF1 17480 101 + 1 UUACUUGGCCGACGAGCAGCACUAACU----------------UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUGGUGCAAUUAAAUUGAGCUAUUUGC---UGGUCUGGUCAAAGUUCU ....(((((((((.(((((.((((((.----------------.....)))))).........((((((((((..........))))))))))..))))---).))).))))))...... ( -34.70) >DroEre_CAF1 19223 120 + 1 UUACUUGGCCGACGAGCAGCGCUAACUUGGCCGGCCAGAGACUUGGCUGUUAGUUUCAGUUCGAGCCCAGUUUUUGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAAAGUUCU ....(((((((((((((.((((.((((.(((((..(.((((((........)))))).)..)).))).))))...))))...........((.....))).)))))).))))))...... ( -39.10) >consensus UUACUUGGCCGACGAGCAGCACUAACU________________UGGCUGUUAGUUUCAGUUCGAGCUCAGUUUUGGUGCAAUUAAAUUGAGCUAUUUGCGUUUUGUCUGGUCAAAGUUCU ....(((((((((((((...((((((......................))))))....)))).((((((((((..........))))))))))...........))).))))))...... (-27.40 = -27.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:15 2006