Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,166,295 – 5,166,391 |
Length | 96 |
Max. P | 0.500000 |
Location | 5,166,295 – 5,166,391 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 68.18 |
Mean single sequence MFE | -21.49 |
Consensus MFE | -10.91 |
Energy contribution | -11.58 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.33 |
Mean z-score | -1.37 |
Structure conservation index | 0.51 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5166295 96 - 27905053 AAUGAAGCAC-----------------AAAAGCUUAGUGUUGAUUAGCUCUGAAAUGCAGUGCUAAUAAAAAUUAUACAGCACUGAAA-AUAUGAUUGCCCAGUUU--UUGCUCAU .((((.(((.-----------------.((((((((((((((((((((.(((.....))).))))))..........)))))))))..-...((......))))))--)))))))) ( -23.80) >DroPse_CAF1 4573 78 - 1 --------------------------------AUAAGGGUA---UACACCUGAUUGUUAGGUAGAAUUUAAAUUGUAUAUUUCUGAAA-AU-UUAUU-CCAAGUAUUCCAUUUGAU --------------------------------....(((.(---(((((((((...)))))).(((..((((((.............)-))-)))))-)...)))))))....... ( -10.52) >DroSec_CAF1 4882 113 - 1 AAUCAAGCACAGGGAAUGUCACAUUGCAAAUGCUUAGUGUUGAUUAGCUCUGAAAUGCAGUGCUAAUAAAAAUUUUACAGCACUGAAA-AUAUUAUUGCCCAGUUG--CUGCUCAU .....(((((.(((((((.......((....))(((((((((((((((.(((.....))).))))))..........)))))))))..-....)))).))).).))--))...... ( -28.00) >DroSim_CAF1 4820 113 - 1 AAUCAAGCACAGAGAAUGUCACAUUGCAAAUGCUUAGUGUUGAUUAGCUCUGAAAUGCAGUGCUAAUAAAAAUUGUACAGCACUGAAA-AUAUUAUUGCCAAGUUU--CUGCUCAU .....(((((((((...((((((((((....))..)))).))))...))))).....(((((((..............)))))))...-.................--.))))... ( -25.84) >DroEre_CAF1 4520 114 - 1 AAUCCUGCACACGGAAUGUAAAUUUGCAAGUGCUAAGUGUUGAUUAGUUCUGAAAGGUAGUGCUAAUAAAAAAUGUACAGCACUGAAAAAUAUUAUUGUCCAAUUU--CCGCUCAU ............(((..((((((((...((((((..(..((.((((((.(((.....))).))))))....))..)..))))))...)))).))))..))).....--........ ( -21.80) >DroYak_CAF1 4902 114 - 1 AAUCAAGCACACGUAAUGUCACCUUGCAAAUGUUUAGUGUUGAUUAGUUUUGAAAGAAAGUGCUAAAAAAAAUUGUACAGCACUGAAAUAUAUUUUUGUCCAAUUC--CAGCUUAU ....((((....((((.......)))).....((((((((((..(((((((...((......))....)))))))..))))))))))...................--..)))).. ( -19.00) >consensus AAUCAAGCACA_GGAAUGUCAC_UUGCAAAUGCUUAGUGUUGAUUAGCUCUGAAAGGCAGUGCUAAUAAAAAUUGUACAGCACUGAAA_AUAUUAUUGCCCAGUUU__CUGCUCAU .................................(((((((((((((((.(((.....))).))))))..........))))))))).............................. (-10.91 = -11.58 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:04 2006