Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,165,635 – 5,165,766 |
Length | 131 |
Max. P | 0.999980 |
Location | 5,165,635 – 5,165,733 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.65 |
Mean single sequence MFE | -24.22 |
Consensus MFE | -23.88 |
Energy contribution | -24.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.61 |
Structure conservation index | 0.99 |
SVM decision value | 5.24 |
SVM RNA-class probability | 0.999980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5165635 98 + 27905053 GCAGCCGUCGCUGUUGCGUGUCUGAUAUUUUAUUUUUAACGCUCAGCGACUUUAUACUACGUAGUAUUUAGUAUCGCUCGCUUUUAAGUUUGCCUUUG (((((.(((((((..((((....((((...))))....)))).)))))))...((((((.........)))))).))).))................. ( -25.00) >DroSec_CAF1 4238 98 + 1 GCAGCCGUCGCUGUUGCGUGUCUGAUAUUUUAUUUUUAACGCUCAGCGACUUUAUACUACGUAGUAUUUAGUAUCGCUCGCUUUUAAGUUUGCCCUUU (((((.(((((((..((((....((((...))))....)))).)))))))...((((((.........)))))).))).))................. ( -25.00) >DroSim_CAF1 4217 98 + 1 GCAGCCGUCGCUGUUGCGUGUCUGAUAUUUUAUUUUUAACGCUCAGCGACUUUAUACUACGUAGUAUUUAGUAUCGCUCGCUUUUAAGUUUGCCUUUU (((((.(((((((..((((....((((...))))....)))).)))))))...((((((.........)))))).))).))................. ( -25.00) >DroEre_CAF1 3897 84 + 1 GCAGCCGUCGCUGUUGCGUGUCUGAUAUUUUAUUUUUAACGCUCAGCGCCUUUAUACUACGUUGUAUUUAGUAUCGCUCGCUUU-------------- (((((.(.(((((..((((....((((...))))....)))).))))))((..((((......))))..))....))).))...-------------- ( -21.10) >DroYak_CAF1 4266 98 + 1 GCAGCCGUCGCUGUUGCGUGUCUGAUAUUUUAUUUUUAACGCUCAGCGACUUUAUACUACGUUGUAUUUAGUAUCGCUCGCUUUUAAGUUUGCCUUUU (((((.(((((((..((((....((((...))))....)))).)))))))...((((((.........)))))).))).))................. ( -25.00) >consensus GCAGCCGUCGCUGUUGCGUGUCUGAUAUUUUAUUUUUAACGCUCAGCGACUUUAUACUACGUAGUAUUUAGUAUCGCUCGCUUUUAAGUUUGCCUUUU (((((.(((((((..((((....((((...))))....)))).)))))))...((((((.........)))))).))).))................. (-23.88 = -24.08 + 0.20)
Location | 5,165,635 – 5,165,733 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.65 |
Mean single sequence MFE | -21.19 |
Consensus MFE | -20.79 |
Energy contribution | -20.99 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.37 |
Structure conservation index | 0.98 |
SVM decision value | 4.68 |
SVM RNA-class probability | 0.999938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5165635 98 - 27905053 CAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAAUAUCAGACACGCAACAGCGACGGCUGC ..(((.....)))....((.(((.((((((.........))))))...(((((((.((((...................))))..))))))).))))) ( -22.21) >DroSec_CAF1 4238 98 - 1 AAAGGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAAUAUCAGACACGCAACAGCGACGGCUGC .(((......)))....((.(((.((((((.........))))))...(((((((.((((...................))))..))))))).))))) ( -22.41) >DroSim_CAF1 4217 98 - 1 AAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAAUAUCAGACACGCAACAGCGACGGCUGC ..(((.....)))....((.(((.((((((.........))))))...(((((((.((((...................))))..))))))).))))) ( -22.21) >DroEre_CAF1 3897 84 - 1 --------------AAAGCGAGCGAUACUAAAUACAACGUAGUAUAAAGGCGCUGAGCGUUAAAAAUAAAAUAUCAGACACGCAACAGCGACGGCUGC --------------...((.(((.((((((.........))))))...(.(((((.((((...................))))..))))).).))))) ( -16.91) >DroYak_CAF1 4266 98 - 1 AAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACAACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAAUAUCAGACACGCAACAGCGACGGCUGC ..(((.....)))....((.(((.((((((.........))))))...(((((((.((((...................))))..))))))).))))) ( -22.21) >consensus AAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAAUAUCAGACACGCAACAGCGACGGCUGC .................((.(((.((((((.........))))))...(((((((.((((...................))))..))))))).))))) (-20.79 = -20.99 + 0.20)
Location | 5,165,662 – 5,165,766 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 92.31 |
Mean single sequence MFE | -17.41 |
Consensus MFE | -14.14 |
Energy contribution | -14.37 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -1.95 |
Structure conservation index | 0.81 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5165662 104 - 27905053 AAGCAGAAAAGCUCCAAAAUUAUGCGAGACGUACAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAA ..........((((...............(((...(((.....)))....)))((((((.....(((((....)))))...))))))))))............. ( -17.40) >DroSec_CAF1 4265 104 - 1 AAGCAGAAAAGCUCCAAAAUUAUGCGAGACGUAAAAGGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAA .(((......((((.....(((((.....)))))..))))..........((.((((((.....(((((....)))))...))))))..))))).......... ( -18.30) >DroSim_CAF1 4244 104 - 1 AAGCAGAAAAGCUUCAAAAUUAUGCGAGACGUAAAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAA ((((......)))).....((((....(((((...(((.....)))...(((((.(.((((((.........))))))...))))))..)))))....)))).. ( -17.90) >DroEre_CAF1 3924 90 - 1 AAGCAGAAAAUCUCCAAAAUUAUGCGAGACGUA--------------AAAGCGAGCGAUACUAAAUACAACGUAGUAUAAAGGCGCUGAGCGUUAAAAAUAAAA ..(((.................)))..(((((.--------------..((((....((((((.........)))))).....))))..))))).......... ( -16.13) >DroYak_CAF1 4293 104 - 1 AAGCAGAAAAGCUCCAAAAUUAUGCGAGACGUAAAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACAACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAA .(((......)))......((((....(((((...(((.....)))...(((((.(.((((((.........))))))...))))))..)))))....)))).. ( -17.30) >consensus AAGCAGAAAAGCUCCAAAAUUAUGCGAGACGUAAAAAGGCAAACUUAAAAGCGAGCGAUACUAAAUACUACGUAGUAUAAAGUCGCUGAGCGUUAAAAAUAAAA ..(((.................)))..(((((...(((.....)))...(((((...((((((.........))))))....)))))..))))).......... (-14.14 = -14.37 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:03 2006