Locus 1806

Sequence ID 3R_DroMel_CAF1
Location 5,164,124 – 5,164,227
Length 103
Max. P 0.741786
window2974

overview

Window 4

Location 5,164,124 – 5,164,227
Length 103
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 94.09
Mean single sequence MFE -20.77
Consensus MFE -18.62
Energy contribution -18.66
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.26
Structure conservation index 0.90
SVM decision value 0.45
SVM RNA-class probability 0.741786
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 5164124 103 + 27905053
AACGCAAUUUGUUGCAUGCGCCGCUGCCUUAUCCAGCAACAACCA-A---GCUACGCAGCAACAACAACCCCGUGUAAGCCAGGCCAACAAUAACAAAUCAUCUCGG
......((((((((..((.(((((((.......))))........-.---(((((((...............)))).)))..)))))....))))))))........ ( -19.26)
>DroSec_CAF1 2806 103 + 1
AACGCAAUUUGUUGCAUGCGCCGCUGCCUUAUCCAGCAACAACCA-A---GCUACGCAGAAACAACAUCCCCGUGUAAGCCAGGCCAAAAAUAACAAAUCAUCUCGG
......((((((((..((.(((((((.......))))........-.---(((((((...............)))).)))..)))))....))))))))........ ( -19.26)
>DroSim_CAF1 2771 103 + 1
AACGCAAUUUGUUGCAUGCGCCGCUGCCUUAUCCAGCAACAACCA-A---GCUACGCAGCAACAACAACCCCGUGUAAGCCAGGCCAACAAUAACAAAUCAUCUCGG
......((((((((..((.(((((((.......))))........-.---(((((((...............)))).)))..)))))....))))))))........ ( -19.26)
>DroEre_CAF1 2440 104 + 1
AACGCAAUUUGUUGCAUGCGCCGCUGCCUUAUCCAGCUACAAAAAAA---GCUACGCAGCAACAACAACCCCGUGUAAGCCAGGCCAACAAUAACAAAUCAUCGCGG
..(((.((((((((..((.((((((((.......((((........)---)))..)))))....(((......)))......)))))....))))))))....))). ( -23.50)
>DroYak_CAF1 2762 107 + 1
AACGCAAUUUGUUGCAUGCGCCGCUGCCUUAUCCAGCAACAAAAAAAAAUGCUGCGCAGCAACAACAACCCCGUGUAAGCCAGGCCAACAAUAACAAAACAUCUUGG
.((((...(((((((.(((((.(((((........)))............)).)))))))))))).......))))...(((((..................))))) ( -22.57)
>consensus
AACGCAAUUUGUUGCAUGCGCCGCUGCCUUAUCCAGCAACAACCA_A___GCUACGCAGCAACAACAACCCCGUGUAAGCCAGGCCAACAAUAACAAAUCAUCUCGG
......((((((((..((.(((((((.......)))).............(((((((...............)))).)))..)))))....))))))))........ (-18.62 = -18.66 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:59 2006