Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,163,563 – 5,163,661 |
Length | 98 |
Max. P | 0.720100 |
Location | 5,163,563 – 5,163,661 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 66.78 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -10.19 |
Energy contribution | -11.63 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.06 |
Mean z-score | -2.69 |
Structure conservation index | 0.39 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5163563 98 - 27905053 GA---AAAUGUGUGUGACACAUAGGGUGGGAAAGCUCGAGCUUGGGGUUUAUCACCGACACCACCAAGCAAAUAGAAGCACGCAUACAAAUGCGUAUGUGG ..---..(((((.....)))))..(((((..((((....)))).((........))....)))))..((........)).(((((((......))))))). ( -28.60) >DroSec_CAF1 2268 75 - 1 GG--------------------UGGGUGGGAAAGCUCGAGCUUGGGCUUUAUCA------CCACCAAGCAAAUGGAAGCACGCAUACAAAUGCGUAUGUGG ((--------------------(((.((..((((((((....))))))))..))------)))))..((........)).(((((((......))))))). ( -29.70) >DroEre_CAF1 1883 79 - 1 GAGGAAAAUGUGUGCGA--CAUAGGGUGGAAAAG---GAGCUUGGAGUUUAUCA------CCACC-AGCAAAUAGAACGACGCAUACAAAU---------- ........((((((((.--.....(((((.....---((((.....))))....------)))))-..(.....).....))))))))...---------- ( -20.00) >consensus GA___AAAUGUGUG_GA__CAUAGGGUGGGAAAGCUCGAGCUUGGGGUUUAUCA______CCACCAAGCAAAUAGAAGCACGCAUACAAAUGCGUAUGUGG ........................(((((..((((....)))).((.....)).......)))))..............((((((....))))))...... (-10.19 = -11.63 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:58 2006