Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,161,595 – 5,161,687 |
Length | 92 |
Max. P | 0.508581 |
Location | 5,161,595 – 5,161,687 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -17.60 |
Consensus MFE | -14.14 |
Energy contribution | -14.03 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.17 |
Structure conservation index | 0.80 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.508581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5161595 92 + 27905053 UUUUGUAACACAAAA-----CUCCCUUGCAGUUUCUGUCCCUCUUCACCAUCGCCACGAGCAUCUUUGACAUCUACUGCUAUGCUAUGGCUGCGCCA (((((.....)))))-----.......(((((...((((...........(((...)))........))))...))))).......((((...)))) ( -13.81) >DroPse_CAF1 307 97 + 1 CCCAAGUGUAUAAAUCUUCUCUUCCUUGCAGUUCCUUUCACUGUUUACCAUUGCAUCGAGCGUCUUUGAUAUCUACUGCUAUGCGAUGGCCGCACCU .....((((..................(((((.......)))))...(((((((((..((((..............)))))))))))))..)))).. ( -19.84) >DroSec_CAF1 310 92 + 1 UUUAGUAACACAAAA-----CUCCCUUGCAGUUCCUGUCCCUCUUCACCAUCGCCACGAGCAUCUUUGACAUCUACUGCUAUGCGAUGGCUGCGCCA ...............-----.......((((....((........))(((((((....((((..............))))..))))))))))).... ( -17.64) >DroSim_CAF1 310 92 + 1 UUUAGUAACACAAAA-----CUCCCUUGCAGUUUCUGUCUCUCUUCACCAUCGCCACGAGCAUCUUUGACAUCUACUGCUAUGCGAUGGCUGCGCCA ...............-----.......((((....((........))(((((((....((((..............))))..))))))))))).... ( -17.64) >DroYak_CAF1 307 92 + 1 UUGUGUAACAUAAAC-----CCCCUUUGCAGUUCCUGUCCCUCUUCACCAUCGCCACGAGCAUCUUUGACAUCUACUGCUAUGCGAUGGCUGCGCCA ..(((((........-----.......((((...)))).........(((((((....((((..............))))..))))))).))))).. ( -18.84) >DroPer_CAF1 307 97 + 1 CCCAAGUGUAUAAAUCUUCUCUUCCUUGCAGUUCCUUUCACUGUUUACCAUUGCCUCGAGCGUCUUUGAUAUCUACUGCUAUGCGAUGGCCGCACCU .....((((..................(((((.......)))))...(((((((....((((..............))))..)))))))..)))).. ( -17.84) >consensus UUUAGUAACACAAAA_____CUCCCUUGCAGUUCCUGUCCCUCUUCACCAUCGCCACGAGCAUCUUUGACAUCUACUGCUAUGCGAUGGCUGCGCCA ..........................(((((................(((((((....((((..............))))..))))))))))))... (-14.14 = -14.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:57 2006