Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,153,317 – 5,153,407 |
Length | 90 |
Max. P | 0.935213 |
Location | 5,153,317 – 5,153,407 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.74 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -21.31 |
Energy contribution | -21.33 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.61 |
Structure conservation index | 0.92 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5153317 90 - 27905053 AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCCGUGCGGUCGUGGCCUACAUGCUUAUAGGCUAAA---------AAA ......(((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......)))...---------... ( -23.00) >DroSec_CAF1 27296 92 - 1 AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAAAC-------AAA .....((((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......))))....-------... ( -22.30) >DroSim_CAF1 26882 93 - 1 AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAAAA------AAAA .....((((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......))))....------.... ( -22.30) >DroEre_CAF1 25813 91 - 1 AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUA--------AAAAAA ..((.(((((............(((((((.....)))))))...(((.((((.((......)).))))))).))))).)).....--------...... ( -22.20) >DroYak_CAF1 24973 99 - 1 AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAAUCAAAAAAAAAA .....((((.............(((((((.....)))))))..(((((((((.((......)).)))).))))).......)))).............. ( -22.30) >DroAna_CAF1 47263 90 - 1 AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGCAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGC-UCAG-C-------UCC ......(((((((((((((....))))))))))..((((....(((((((((.((......)).)))).)))))......))-)).)-)-------).. ( -27.20) >consensus AACAAAAGCAAUUUGAAAACAAUUUUUCGAGUUUCGAGAAAAACGUGUGGCCCUGUGCGGUCGUGGCCUACAUGCUUAUGGGCUUAA_C_______AAA ..((.((((((((((((((....))))))))))...........((((((((.((......)).)))).)))))))).))................... (-21.31 = -21.33 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:55 2006