Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 841,327 – 841,422 |
Length | 95 |
Max. P | 0.727955 |
Location | 841,327 – 841,422 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.95 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -26.10 |
Energy contribution | -26.23 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.67 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 841327 95 - 27905053 CGUAAUGCAUAUG-------------CCCACAUGGGUUCGCAAUGGUUACAGAUGUAGGUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGG------------ ......((....)-------------)((((...(((((((((((.((((....)))).).((((....))))....))))))))))....((((....)))).))))------------ ( -28.50) >DroSec_CAF1 17088 99 - 1 CGUAAUGCAUAUG-------------CCCACAUGGGUUCGCAGUGGUUACAGAUGUAGCUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGGAUCG-------- .......((((.(-------------(((((...........((((((((....))))))))(((....))).))))))))))((((..(.((((....)))).)..)))).-------- ( -36.70) >DroSim_CAF1 16308 107 - 1 CGUAAUGCAUAUG-------------CCCACAUGGGUUCGCAGUGGUUACAGAUGUAGCUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGGAUCGGCGGAUCG ....((.((((.(-------------(((((...........((((((((....))))))))(((....))).)))))))))).)).....((((.((.((((....)))).)).)))). ( -41.50) >DroEre_CAF1 18102 108 - 1 CGUAAUGCUAAUGCUUGCAGCGCCGGCCCACAUGGGUUCGCCAUGGUUACAGAUGUAGCUGCAGCCA----UGGUGGGUUGUGGAUCAGUGGAUCGGCGGAUCGGCGGAUCG-------- .((((.((....))))))..(((((..((.....((..((((((((((.(((......))).)))))----)))))..))((.((((....)))).))))..))))).....-------- ( -48.80) >consensus CGUAAUGCAUAUG_____________CCCACAUGGGUUCGCAAUGGUUACAGAUGUAGCUACAGCCAUGGCUGGUGGGUUGUGGAUCAGUGGAUCGGUGGAUCGGUGGAUCG________ ...........................((((...(((((((...((((((....))))))((((((..........)))))).((((....)))).))))))).))))............ (-26.10 = -26.23 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:12 2006