Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,138,220 – 5,138,314 |
Length | 94 |
Max. P | 0.852736 |
Location | 5,138,220 – 5,138,314 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 74.93 |
Mean single sequence MFE | -19.06 |
Consensus MFE | -9.92 |
Energy contribution | -10.09 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.52 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.852736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5138220 94 + 27905053 GUGGAAAACUGGAAAAAAAAC-----ACCAAACAGCAAACAAAAAG-----AAGAGAUGAGUGCGACAUUCGAGCGUUAAAAUUAACGAGUGUCACAAUUUACG (((((....(((.........-----.)))....(((..((.....-----......))..)))((((((((..............))))))))....))))). ( -14.74) >DroSec_CAF1 12724 85 + 1 GUGGAAAACUGGGCAAAAACC--------------CAAACAAAAAG-----CAGAGAUGAGUGCGACAUUCGAGCGUUAAAAUUAACGAGUGUCACAAUUUACG (((((....((((......))--------------))........(-----((........)))((((((((..............))))))))....))))). ( -18.84) >DroSim_CAF1 9398 74 + 1 GUGGAA-----------AACC--------------CAAACAAAAAG-----CAGAGAUGAGUGCGACAUUCGAGCGUUAAAAUUAACGAGUGUCACAAUUUACG (((((.-----------....--------------..........(-----((........)))((((((((..............))))))))....))))). ( -14.44) >DroEre_CAF1 10584 104 + 1 GUGGCAAACUCAUCAAAAACACAAGCAGCAAACAGCAAACAAAAAGGCGAGAUGAGAUGAGUGCGACAUUCGAGCGUUAAAAUUAACGAGUGUCACAAUUUACG ((((((..((((((.............((.....))...(.....)....)))))).((((((...))))))..(((((....)))))..))))))........ ( -21.10) >DroYak_CAF1 10011 97 + 1 GUGGCAAACUCAUCAAAAAC-------GCAAACAGCAAACAAAAAAACGAGAUGAGAUGAGUGCGACAUUCGAGCGUUAAAAUUAACGAGUGUCACAAUUUACG ((((((..((((((......-------((.....))...(........).)))))).((((((...))))))..(((((....)))))..))))))........ ( -21.00) >DroAna_CAF1 32217 81 + 1 GCGCCAAACUCGGCGCAAACA--------------CAUUUA--AGGGC-------CAGGAGAGUGACAUUCGAGCAUUAAAAUUAACGAGUGUCACAAUUUACG (((((......))))).....--------------......--.....-------.......((((((((((..............))))))))))........ ( -24.24) >consensus GUGGAAAACUCGGCAAAAACC______________CAAACAAAAAG_____AAGAGAUGAGUGCGACAUUCGAGCGUUAAAAUUAACGAGUGUCACAAUUUACG .............................................................((.((((((((..............)))))))).))....... ( -9.92 = -10.09 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:49 2006