Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,128,879 – 5,128,973 |
Length | 94 |
Max. P | 0.962386 |
Location | 5,128,879 – 5,128,973 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 62.83 |
Mean single sequence MFE | -32.08 |
Consensus MFE | -13.26 |
Energy contribution | -14.86 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.25 |
Mean z-score | -2.32 |
Structure conservation index | 0.41 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5128879 94 + 27905053 GAGCCAGGCCAAGUUGAA--CGCAUGGGCCAACUGAAGGCA---------UAGGCAAUAGCCAA-GGAAAAGGCAGGGCACGCGACUUGGGCAC-----GCAACUUGGCCA ......((((((((((..--.((....(((.......))).---------...)).....((((-(......((...))......)))))....-----.)))))))))). ( -33.60) >DroSec_CAF1 10663 89 + 1 GAGCCUGGCCAAGUUGAA--CGAAUGGGCCAA-------------------AGGCAAUAGCCAA-GGAAAAGGCAGGGCACGCGACUUGGCCAACUUGGCCAACUUGGCCA ......((((((((((..--(((...((((((-------------------..((....(((..-......))).(....)))...))))))...)))..)))))))))). ( -37.90) >DroSim_CAF1 7353 80 + 1 GAGCCUGGCCAAGUUGAA--CGAAUGGGCCAA-------------------AGGCAAUAGCCAA-GUGAAAGGCAGGGCACGCGACUUGGCCAACUU---------GGCCA ......((((((((((..--.......(((..-------------------.)))....(((((-((.....((...)).....)))))))))))))---------)))). ( -32.10) >DroYak_CAF1 8048 76 + 1 GAGCCGGGCAAAGUUGAA--CGAAUG------------GCA---------UAGGCAAUCGCCAAGGAAAAGGACAGGGCACGCGACUAGG------------ACUUUGCCC .....((((((((((...--.((...------------((.---------...))..))(((..(........)..)))..........)------------))))))))) ( -22.70) >DroAna_CAF1 30139 102 + 1 GCGUUGCCAAAAGUUGAGUUCGAAUUGGCCAGCCGGCAGCAAGCAGCCAGCAGCUAGCAGCCGG---CGAAAACAGAGCACGCGACUUGGACGA-----G-GACUUGGGCA ....((((..(((((..((((((.((((((.((((((.((.(((........))).)).)))))---)(....).).))...))).))))))..-----.-))))).)))) ( -34.10) >consensus GAGCCGGGCCAAGUUGAA__CGAAUGGGCCAA______GCA__________AGGCAAUAGCCAA_GGAAAAGGCAGGGCACGCGACUUGGCCAA________ACUUGGCCA ......(((((((((.....................................(((....)))...........((((........))))............))))))))). (-13.26 = -14.86 + 1.60)
Location | 5,128,879 – 5,128,973 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 62.83 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -10.86 |
Energy contribution | -12.10 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.27 |
Mean z-score | -2.15 |
Structure conservation index | 0.35 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5128879 94 - 27905053 UGGCCAAGUUGC-----GUGCCCAAGUCGCGUGCCCUGCCUUUUCC-UUGGCUAUUGCCUA---------UGCCUUCAGUUGGCCCAUGCG--UUCAACUUGGCCUGGCUC .((((((((((.-----.(((((((.(.((((((...(((......-..)))....))..)---------)))....).)))).....)))--..))))))))))...... ( -31.90) >DroSec_CAF1 10663 89 - 1 UGGCCAAGUUGGCCAAGUUGGCCAAGUCGCGUGCCCUGCCUUUUCC-UUGGCUAUUGCCU-------------------UUGGCCCAUUCG--UUCAACUUGGCCAGGCUC (((((((((((..(.(((.(((((((..(((......(((......-..)))...))).)-------------------)))))).))).)--..)))))))))))..... ( -39.60) >DroSim_CAF1 7353 80 - 1 UGGCC---------AAGUUGGCCAAGUCGCGUGCCCUGCCUUUCAC-UUGGCUAUUGCCU-------------------UUGGCCCAUUCG--UUCAACUUGGCCAGGCUC (((((---------(((((((((((((.(((.....))).....))-)))))....(((.-------------------..))).......--..)))))))))))..... ( -31.30) >DroYak_CAF1 8048 76 - 1 GGGCAAAGU------------CCUAGUCGCGUGCCCUGUCCUUUUCCUUGGCGAUUGCCUA---------UGC------------CAUUCG--UUCAACUUUGCCCGGCUC (((((((((------------.(.(((.(((((..(.(((((.......)).))).)..))---------)))------------.))).)--....)))))))))..... ( -20.50) >DroAna_CAF1 30139 102 - 1 UGCCCAAGUC-C-----UCGUCCAAGUCGCGUGCUCUGUUUUCG---CCGGCUGCUAGCUGCUGGCUGCUUGCUGCCGGCUGGCCAAUUCGAACUCAACUUUUGGCAACGC ..........-.-----...........((((...........(---(((((.((.(((........))).)).))))))..(((((..............))))).)))) ( -30.94) >consensus UGGCCAAGU________UUGGCCAAGUCGCGUGCCCUGCCUUUUCC_UUGGCUAUUGCCU__________UGC______UUGGCCCAUUCG__UUCAACUUGGCCAGGCUC (((((((((...................(((.....)))..........(((....)))......................................)))))))))..... (-10.86 = -12.10 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:48 2006