Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 5,127,518 – 5,127,609 |
Length | 91 |
Max. P | 0.737461 |
Location | 5,127,518 – 5,127,609 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 90.01 |
Mean single sequence MFE | -25.02 |
Consensus MFE | -20.54 |
Energy contribution | -20.82 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.52 |
Structure conservation index | 0.82 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5127518 91 - 27905053 -UGGCAAGUGGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA -.(((.(((....))).((((((......)))))).........)))..(((((...((((((.....))))))((....)))))))..... ( -26.90) >DroSec_CAF1 9315 84 - 1 --------UAGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA --------.........((((((......))))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... ( -22.60) >DroSim_CAF1 6036 84 - 1 --------UAGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA --------.........((((((......))))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... ( -22.60) >DroEre_CAF1 6988 82 - 1 --------UGGGAACUGGAUGCUGUGAG--GCAUCGACAUAAUGGCCAGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA --------.........((((((....)--)))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... ( -23.30) >DroYak_CAF1 6481 90 - 1 ACAGCAAGUGGCAACUGGAUGCUGUGAA--GCAUCGACAUAAUGGCCGGACGAUAAGUGUGCCGGACAGGCGCAGCUUUGCCAUUGUAAAUA ...((((.(((((((((((((((....)--))))).......((.(((((((.....))).)))).))....)))..))))))))))..... ( -29.70) >consensus ________UGGAAACUGGAUGCUGUGAAGAGCAUCGACAUAAUGGCCGGACGAUAAGUGUGCUGGACAGGCGCAGCUUUGGCAUUGUAAAUA .................((((((......))))))...((((((.(((((.(.....((((((.....)))))).))))))))))))..... (-20.54 = -20.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:46 2006