| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 5,127,212 – 5,127,314 |
| Length | 102 |
| Max. P | 0.617508 |
| Location | 5,127,212 – 5,127,314 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.51 |
| Mean single sequence MFE | -25.72 |
| Consensus MFE | -15.26 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 5127212 102 + 27905053 ACA--GAUA-AA-AGGGGCAAAUGCUGAUGCGUUGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUCAAGAGCUG--------AGAUUAAAAAUUCUGUCUCAAA- (((--((..-..-.((.(((((((((.....((.(((...(((....)))))))).))))))))).))....(((((.....))--------)))........)))))......- ( -29.60) >DroSec_CAF1 9011 101 + 1 A----GAUAGAA-AGAGGUAAAUGCUGAUGCGUUGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUUAAGACCUG--------AGAUUAAAAAUGCCGUUUCUAA- .----..(((((-(..(((((((((....)))))..(((...(((((.(((.(((((....))))).))).))))).....)))--------..........)))).)))))).- ( -25.90) >DroSim_CAF1 5733 100 + 1 A----GAUA-AA-AGCGGCAAAUGCUGAUGCGUCGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUUAAGACCUG--------AGAUUAAAAAUUCCGUUUCUAA- .----..((-.(-(((((....((((((....))))))....(((((.(((.(((((....))))).))).)))))........--------............)))))).)).- ( -24.30) >DroEre_CAF1 6668 98 + 1 UCUGUGGUA-AC-GGGAGCAAGUGCUGAUGCGCUGGCAGA--GAGAACGUGCCACAAGCAUUUGUGCCACACUCUUAAGAAACG--------AGAUUAAAAACCCC--UC-CA-- ....(((..-..-(((.((.(((((....))))).)).((--(((...(((.(((((....))))).))).)))))........--------..........))).--.)-))-- ( -27.50) >DroYak_CAF1 6160 97 + 1 A----GAUA-ACAGGGGGCAAAGGCUGAUGCGUUGGCAGA--GAGGACGUGCCACAAGCAUUUGUGCCACUUUCUCAAGCCCUA--------AGAUUAGAAACCCC--UUCCAC- .----....-..(((((.....((((..(((....)))..--(((((.(((.(((((....))))).))).))))).))))(((--------....)))...))))--).....- ( -29.90) >DroAna_CAF1 28787 106 + 1 A----GACG-AA-AAGGGCAAAUGUUGAUGAGUUUGCAAUAC--AAACGUGCCACAAGCACCGGUGUCGA-UUCUUAAGACUAAACAGCUCUAGAAAAAGAAUUCAAAAUUACAC .----((((-..-..((((((((........)))))).....--.....(((.....)))))..))))((-(((((....(((........)))...)))))))........... ( -17.10) >consensus A____GAUA_AA_AGGGGCAAAUGCUGAUGCGUUGGCAGAACGAGAACGUGCCACAAGCAUUUGUGCCACUUUCUUAAGACCUG________AGAUUAAAAAUUCCGUUUCAAA_ .................((.(((((....))))).)).....(((((.(((.((((......)))).))).)))))....................................... (-15.26 = -15.77 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:45 2006